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Mutant Information

Mutant Name	FN1751-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1751-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27822899	G-A	HET
SBS	Chr10	1383189	C-G	HET
SBS	Chr10	6991140	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g12560
SBS	Chr10	9009080	C-T	HET
SBS	Chr11	5757675	A-G	HET
SBS	Chr2	2851226	A-C	Homo
SBS	Chr2	2851227	C-A	Homo
SBS	Chr3	17283786	G-A	Homo
SBS	Chr4	1935744	C-T	HET
SBS	Chr4	34499168	C-T	HET
SBS	Chr5	22195224	T-G	Homo
SBS	Chr5	24682822	C-G	Homo
SBS	Chr5	27506876	A-T	Homo
SBS	Chr5	6421868	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g11370
SBS	Chr6	14993330	G-T	HET
SBS	Chr6	27167835	T-C	HET
SBS	Chr6	5601422	C-T	HET
SBS	Chr7	14221291	C-T	Homo
SBS	Chr7	22646587	A-T	Homo
SBS	Chr7	8476329	C-T	HET
SBS	Chr7	8672634	C-T	HET
SBS	Chr8	19298750	A-T	Homo
SBS	Chr8	3402676	T-G	Homo
SBS	Chr9	16671969	C-A	Homo

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	144886	144887	1
Deletion	Chr1	293270	293277	7	LOC_Os01g01580
Deletion	Chr2	4407326	4407342	16
Deletion	Chr11	9701675	9701677	2
Deletion	Chr2	14519494	14519495	1
Deletion	Chr4	15484861	15484862	1
Deletion	Chr10	16055837	16055848	11	LOC_Os10g30826
Deletion	Chr1	17852390	17852401	11
Deletion	Chr3	20150514	20150525	11
Deletion	Chr6	21763224	21763225	1
Deletion	Chr6	28206789	28206790	1
Deletion	Chr4	30568312	30568313	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	25435571	25435581	11
Insertion	Chr1	31410917	31410918	2
Insertion	Chr11	9977048	9977048	1
Insertion	Chr12	27369090	27369090	1
Insertion	Chr3	21387216	21387216	1	LOC_Os03g38530
Insertion	Chr4	11225770	11225771	2
Insertion	Chr9	228192	228192	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	19444453	19593320	2
Inversion	Chr4	19444461	19595399	2
Inversion	Chr4	23047312	23328768	LOC_Os04g38780
Inversion	Chr4	23049087	23661666	2
Inversion	Chr4	23328780	23643988

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	16996046	Chr4	3614421
Translocation	Chr8	19390445	Chr3	19732410	LOC_Os08g31350
Translocation	Chr10	20131047	Chr4	8779534	2
Translocation	Chr11	24451275	Chr3	12581340	LOC_Os11g40870

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