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Mutant Information

Mutant Name	FN1753-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1753-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12522196	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g22270
SBS	Chr2	715476	T-C	Homo
SBS	Chr2	1429014	A-G	HET
SBS	Chr3	26770774	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g47320
SBS	Chr4	5261918	G-A	HET
SBS	Chr4	26353955	T-C	Homo
SBS	Chr5	5035872	C-T	Homo
SBS	Chr5	10116206	A-G	HET
SBS	Chr6	27170104	C-A	HET
SBS	Chr6	31059023	A-T	HET
SBS	Chr6	31059027	G-A	HET
SBS	Chr7	10036089	G-A	Homo
SBS	Chr8	13445007	C-T	Homo
SBS	Chr9	17997398	A-G	HET
SBS	Chr10	10369288	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g20570
SBS	Chr12	10925642	A-T	HET
SBS	Chr12	11468824	T-G	Homo

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	5661598	5661624	26	LOC_Os10g10300
Deletion	Chr2	7859090	7859094	4
Deletion	Chr10	10039125	10039126	1
Deletion	Chr6	12924608	12924610	2
Deletion	Chr9	16116159	16116161	2
Deletion	Chr5	16526913	16526918	5
Deletion	Chr7	18225670	18225679	9
Deletion	Chr4	19696281	19696282	1
Deletion	Chr5	21448001	21880000	431999	75
Deletion	Chr4	27295393	27295397	4
Deletion	Chr4	32932250	32932259	9

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	1613925	1613927	3
Insertion	Chr5	9889583	9889586	4	LOC_Os05g17270
Insertion	Chr6	28709509	28709509	1
Insertion	Chr10	20706353	20706356	4

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1372176	1580331	LOC_Os12g03480
Inversion	Chr12	1372180	1580348	LOC_Os12g03480

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	3581658	Chr2	11747294
Translocation	Chr8	13852224	Chr2	16736672	2
Translocation	Chr9	15464128	Chr6	20865149	2
Translocation	Chr9	17224523	Chr6	20902394	LOC_Os09g28354
Translocation	Chr9	17271819	Chr4	4107386	2
Translocation	Chr11	17800770	Chr3	24328170	2