Search Nipponbare

Mutant Information

Mutant Name	FN1755-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1755-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30292384	A-G	HET
SBS	Chr10	14568994	A-G	Homo
SBS	Chr10	2788873	G-A	HET
SBS	Chr11	14003132	G-A	Homo
SBS	Chr11	28988097	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g48080
SBS	Chr2	11904100	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g20210
SBS	Chr2	1882301	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g04260
SBS	Chr2	22473061	T-C	HET
SBS	Chr2	3904061	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g07540
SBS	Chr3	1437907	A-G	HET
SBS	Chr3	1557314	C-A	HET
SBS	Chr3	21256696	A-G	HET
SBS	Chr3	27996949	A-C	Homo
SBS	Chr4	7451312	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g13390
SBS	Chr5	10229119	T-C	HET
SBS	Chr5	16890864	A-T	HET
SBS	Chr5	7435341	G-A	HET
SBS	Chr6	27387345	A-C	Homo
SBS	Chr7	17652528	A-T	HET
SBS	Chr8	19595826	G-A	HET
SBS	Chr8	24725981	A-T	HET
SBS	Chr8	27011741	G-T	HET
SBS	Chr8	6958791	C-A	HET
SBS	Chr9	15572200	G-A	HET

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2760344	2760350	6	LOC_Os08g05280
Deletion	Chr5	5762285	5762289	4
Deletion	Chr4	6073136	6073137	1	LOC_Os04g11170
Deletion	Chr2	6501128	6501131	3
Deletion	Chr12	9676676	9676687	11
Deletion	Chr2	14999455	14999457	2
Deletion	Chr1	16978784	16978785	1
Deletion	Chr1	21228167	21228171	4
Deletion	Chr7	21482042	21482043	1
Deletion	Chr6	23327968	23327969	1	LOC_Os06g39310
Deletion	Chr11	24854948	24854953	5
Deletion	Chr2	31949733	31949738	5

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	16202692	16202693	2
Insertion	Chr12	13754673	13754673	1
Insertion	Chr4	4244006	4244006	1
Insertion	Chr6	2670374	2670374	1
Insertion	Chr9	17055483	17055483	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	3065249	3065560
Inversion	Chr10	21580139	21580399	LOC_Os10g40260
Inversion	Chr11	24983826	25136104	LOC_Os11g41640
Inversion	Chr11	24983835	25136104	LOC_Os11g41640
Inversion	Chr6	25238491	25238642	LOC_Os06g42030
Inversion	Chr3	31128768	31128965

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	478587	Chr4	435620	LOC_Os06g01840
Translocation	Chr6	478615	Chr4	431070	LOC_Os06g01840
Translocation	Chr10	9111338	Chr7	19139231
Translocation	Chr12	15185297	Chr3	265046	2
Translocation	Chr12	15185560	Chr3	265043	2

Main menu