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Mutant Information

Mutant Name	FN1757-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1757-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10658873	C-A	HET	STOP_GAINED	LOC_Os01g18860
SBS	Chr1	21197418	A-T	Homo
SBS	Chr10	3462749	C-T	Homo
SBS	Chr10	3462750	A-C	Homo
SBS	Chr11	24987824	A-G	Homo
SBS	Chr12	10356924	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18010
SBS	Chr12	10356925	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18010
SBS	Chr12	4011765	C-T	HET
SBS	Chr12	8067252	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g14200
SBS	Chr2	20379822	G-T	Homo
SBS	Chr2	31961111	G-A	Homo
SBS	Chr2	6825710	C-A	Homo
SBS	Chr2	6825711	G-A	Homo
SBS	Chr3	16109734	T-C	HET
SBS	Chr3	17022980	A-G	HET
SBS	Chr3	17420029	G-C	HET
SBS	Chr4	27538015	A-T	HET
SBS	Chr4	30436300	T-G	HET
SBS	Chr4	6666260	C-A	HET
SBS	Chr5	15205458	C-T	Homo
SBS	Chr5	23523603	T-G	Homo
SBS	Chr5	27065311	A-G	Homo
SBS	Chr5	3540453	T-A	HET
SBS	Chr6	30275166	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g49990
SBS	Chr7	19549040	C-T	HET
SBS	Chr7	26329895	A-T	HET
SBS	Chr8	2674587	A-T	Homo
SBS	Chr8	3434395	G-A	Homo
SBS	Chr9	11294416	C-T	Homo

Deletions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1621326	1621327	1
Deletion	Chr5	4078398	4078399	1
Deletion	Chr12	7148001	7169000	20999	3
Deletion	Chr7	11300559	11300586	27
Deletion	Chr2	13566359	13566366	7
Deletion	Chr1	17708001	17940000	231999	37
Deletion	Chr3	35943742	35943743	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	16831110	16831110	1
Insertion	Chr3	26761919	26761980	62
Insertion	Chr5	28359486	28359486	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	35432729	35432903	LOC_Os03g62600

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	20335724	Chr1	7822165

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