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Mutant Information

Mutant Name	FN1758-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1758-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (46.67% Albino) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6056349	T-A	HET
SBS	Chr1	33006224	A-C	HET
SBS	Chr1	33196134	A-T	HET
SBS	Chr1	33196135	C-T	HET
SBS	Chr1	38970241	C-T	HET
SBS	Chr2	20711458	T-A	HET
SBS	Chr4	2302682	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g04800
SBS	Chr4	7164931	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g12980
SBS	Chr4	11201390	C-A	HET
SBS	Chr4	31859700	G-A	Homo
SBS	Chr5	26947945	A-G	HET
SBS	Chr6	20497313	C-T	HET
SBS	Chr7	18625087	C-T	HET
SBS	Chr8	13383178	C-T	HET
SBS	Chr10	196338	G-A	HET
SBS	Chr10	5120432	G-A	HET
SBS	Chr10	7788710	G-A	HET
SBS	Chr10	8236445	T-C	HET
SBS	Chr10	19873500	C-T	Homo
SBS	Chr11	16514404	A-G	HET
SBS	Chr11	17362099	G-C	HET
SBS	Chr12	11936786	A-T	HET
SBS	Chr12	19285349	C-T	HET

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	6086025	6086026	1	LOC_Os12g11290
Deletion	Chr4	6323553	6323559	6	LOC_Os04g11540
Deletion	Chr1	6404251	6404260	9
Deletion	Chr12	11883001	11919000	35999	6
Deletion	Chr8	14605485	14605486	1
Deletion	Chr3	15893650	15893651	1	LOC_Os03g27730
Deletion	Chr9	22222420	22222427	7
Deletion	Chr6	23894001	23909000	14999	3
Deletion	Chr4	25253001	25270000	16999	3
Deletion	Chr2	28076839	28076845	6
Deletion	Chr1	30746572	30746575	3
Deletion	Chr1	31299156	31299160	4

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	17969694	17969742	49
Insertion	Chr10	5018629	5018629	1	LOC_Os10g09280

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	13564620	13564926	LOC_Os02g22780
Inversion	Chr4	15332740	15389142	LOC_Os04g26300

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	27905913	Chr1	34985610	LOC_Os07g46690
Translocation	Chr7	27933358	Chr1	34985667	LOC_Os07g46730

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