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Mutant Information

Mutant Name	FN1760-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1760-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (6.67% Albino) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	7620817	T-C	HET
SBS	Chr11	18439047	G-C	HET
SBS	Chr12	22013134	A-T	HET
SBS	Chr12	22013135	C-T	HET
SBS	Chr12	26586436	A-C	HET
SBS	Chr12	9730735	C-T	Homo
SBS	Chr2	21237733	A-C	HET
SBS	Chr2	25782403	A-T	HET
SBS	Chr2	32749350	T-C	HET
SBS	Chr2	5492638	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g10460
SBS	Chr3	10949197	C-G	HET
SBS	Chr3	13397715	C-T	HET
SBS	Chr3	34460173	T-G	Homo
SBS	Chr4	23237449	T-C	HET
SBS	Chr4	32800245	A-G	HET
SBS	Chr4	6452031	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g11780
SBS	Chr4	8213725	A-G	Homo
SBS	Chr5	25294100	C-T	HET
SBS	Chr6	7161305	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g13060
SBS	Chr7	24605823	G-A	Homo
SBS	Chr8	13025674	T-A	HET
SBS	Chr8	5118763	C-G	Homo
SBS	Chr9	10447388	G-A	HET
SBS	Chr9	5531776	G-A	HET
SBS	Chr9	6189283	A-G	HET
SBS	Chr9	6229152	G-A	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	6620858	6620859	1
Deletion	Chr11	7145183	7145184	1
Deletion	Chr4	9431433	9431438	5
Deletion	Chr1	12402018	12402022	4
Deletion	Chr1	12877337	12877346	9
Deletion	Chr9	13855028	13855030	2
Deletion	Chr6	16228437	16228443	6
Deletion	Chr10	20065059	20065066	7
Deletion	Chr5	20658001	20954000	295999	45
Deletion	Chr5	20839914	20839915	1	LOC_Os05g35100
Deletion	Chr5	20982001	21133000	150999	23
Deletion	Chr2	21414878	21414882	4
Deletion	Chr4	23161001	23188000	26999	6

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	35992359	35992360	2
Insertion	Chr11	22889740	22889776	37
Insertion	Chr5	28304136	28304137	2
Insertion	Chr6	17429716	17429716	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	16148909	16230067

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1252841	Chr9	7744977	LOC_Os12g03260
Translocation	Chr11	5112714	Chr8	3853382	2
Translocation	Chr8	7733738	Chr1	10761500	2
Translocation	Chr8	9591081	Chr1	10762345	LOC_Os08g15800
Translocation	Chr11	9998092	Chr6	11161646
Translocation	Chr6	14189369	Chr1	34370218
Translocation	Chr10	15383273	Chr4	16289330
Translocation	Chr7	22081676	Chr4	16289158
Translocation	Chr12	25328264	Chr11	23147526	LOC_Os12g40910

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