Search Nipponbare

Mutant Information

Mutant Name	FN1762-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1762-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10194879	C-A	Homo
SBS	Chr1	3905569	T-A	HET
SBS	Chr1	4167830	A-G	HET
SBS	Chr10	22517996	T-A	Homo
SBS	Chr11	10483476	C-G	Homo
SBS	Chr11	4114749	G-C	Homo
SBS	Chr11	9974630	T-G	HET
SBS	Chr12	205314	G-C	Homo
SBS	Chr2	15409724	T-G	HET
SBS	Chr2	20528122	C-T	HET
SBS	Chr2	35109610	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g57305
SBS	Chr3	22170591	G-A	HET
SBS	Chr3	34479555	G-A	HET
SBS	Chr4	10685381	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g19240
SBS	Chr4	15904245	G-A	HET
SBS	Chr4	20410426	G-A	HET
SBS	Chr4	33117902	G-A	Homo
SBS	Chr4	33316637	G-A	Homo
SBS	Chr5	8622350	G-T	Homo
SBS	Chr6	30408335	T-A	HET
SBS	Chr7	19081972	A-G	HET
SBS	Chr8	21431603	G-A	HET
SBS	Chr9	18032789	C-G	HET
SBS	Chr9	19937269	G-A	HET	STOP_GAINED	LOC_Os09g33750

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	615001	1232000	616999	111
Deletion	Chr7	893932	893942	10
Deletion	Chr3	5992371	5992380	9
Deletion	Chr5	7781361	7781362	1
Deletion	Chr9	8680202	8680203	1
Deletion	Chr5	9145888	9145892	4	LOC_Os05g16180
Deletion	Chr11	13541001	13796000	254999	30
Deletion	Chr12	14089376	14089383	7
Deletion	Chr12	16186821	16186822	1
Deletion	Chr7	16879644	16879645	1
Deletion	Chr5	18858298	18858301	3	LOC_Os05g32340
Deletion	Chr10	20433945	20433947	2
Deletion	Chr1	21193242	21193252	10	LOC_Os01g37860
Deletion	Chr8	23045970	23045971	1

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	22668641	22668641	1
Insertion	Chr11	23460964	23460973	10
Insertion	Chr12	25821822	25821824	3
Insertion	Chr12	9173793	9173793	1
Insertion	Chr3	35105050	35105050	1
Insertion	Chr4	21490859	21490859	1
Insertion	Chr4	480831	480831	1
Insertion	Chr4	7780840	7780840	1
Insertion	Chr5	169904	169909	6
Insertion	Chr7	1128506	1128506	1
Insertion	Chr7	12906001	12906010	10
Insertion	Chr7	16933035	16933036	2
Insertion	Chr7	8766718	8766718	1	LOC_Os07g15210
Insertion	Chr8	5130577	5130578	2
Insertion	Chr9	1229802	1229807	6

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	21382710	21383113
Inversion	Chr8	25878364	25897216	2
Inversion	Chr8	25878379	25897221	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2330068	Chr4	6525979	2
Translocation	Chr10	10948614	Chr4	2115558
Translocation	Chr8	11689874	Chr6	17726556
Translocation	Chr12	12548562	Chr10	18187098	LOC_Os12g22260
Translocation	Chr11	22150619	Chr9	3414361	LOC_Os11g37520
Translocation	Chr12	22729668	Chr1	24726876

Main menu