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Mutant Information

Mutant Name	FN1763-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1763-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19038879	A-T	Homo
SBS	Chr1	24935618	G-A	Homo
SBS	Chr1	271762	G-A	HET
SBS	Chr1	34052599	G-A	HET
SBS	Chr1	43140227	A-G	Homo
SBS	Chr10	6363955	G-A	HET
SBS	Chr10	8474631	C-T	Homo
SBS	Chr11	20023732	C-T	HET
SBS	Chr12	3478755	G-T	HET
SBS	Chr2	5607505	G-A	Homo
SBS	Chr2	6996614	T-C	Homo
SBS	Chr3	17061045	G-A	Homo
SBS	Chr3	26229090	C-G	Homo
SBS	Chr4	8464728	C-T	Homo
SBS	Chr5	14233089	G-T	Homo
SBS	Chr5	7014079	C-T	HET
SBS	Chr6	17397551	G-T	Homo
SBS	Chr6	25958241	A-G	HET
SBS	Chr6	26384770	C-T	HET
SBS	Chr8	11929571	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g19920
SBS	Chr8	11950732	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g19970
SBS	Chr8	16263901	C-T	HET
SBS	Chr8	21271781	G-C	HET
SBS	Chr9	16050646	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g26550

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	132300	132301	1
Deletion	Chr8	1666886	1666888	2
Deletion	Chr3	3610836	3610837	1
Deletion	Chr8	4097830	4097831	1
Deletion	Chr6	4623798	4623801	3
Deletion	Chr11	10229105	10229110	5
Deletion	Chr2	10513020	10513021	1
Deletion	Chr10	11685946	11685950	4	LOC_Os10g22550
Deletion	Chr10	14213517	14213529	12
Deletion	Chr6	14324826	14324840	14	LOC_Os06g24440
Deletion	Chr8	17058106	17058156	50
Deletion	Chr7	22905979	22906031	52
Deletion	Chr2	26652147	26652149	2
Deletion	Chr2	27590419	27590421	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	23044082	23044082	1
Insertion	Chr12	8264472	8264474	3
Insertion	Chr2	15513158	15513168	11
Insertion	Chr6	9639783	9639826	44
Insertion	Chr7	9887297	9887298	2
Insertion	Chr8	95845	95848	4

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	14330160	14501280	2
Inversion	Chr2	14330170	14501283	2
Inversion	Chr11	21519947	22048701
Inversion	Chr11	21528230	22048718
Inversion	Chr12	25576142	25743960
Inversion	Chr12	25576163	25743970
Inversion	Chr5	27073829	27152032	2
Inversion	Chr5	27073834	27154040

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	963985	Chr3	31563999
Translocation	Chr7	3947140	Chr1	34887370	2
Translocation	Chr9	5080279	Chr4	10495341
Translocation	Chr11	21520080	Chr6	26777740	2
Translocation	Chr11	21528227	Chr6	26777737	2
Translocation	Chr6	23699153	Chr4	32237838
Translocation	Chr7	29641378	Chr5	27154034	LOC_Os07g49490
Translocation	Chr7	29641382	Chr5	27152033	2
Translocation	Chr4	30319018	Chr2	19086601	LOC_Os04g51190

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