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Mutant Information

Mutant Name	FN1764-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1764-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	33249402	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g57560
SBS	Chr1	41589703	C-T	HET
SBS	Chr10	13595663	T-A	HET
SBS	Chr10	13595664	G-A	HET
SBS	Chr10	13639975	G-T	HET
SBS	Chr12	1283589	A-G	HET
SBS	Chr2	10839643	G-A	HET
SBS	Chr2	17725171	G-A	HET
SBS	Chr2	28698785	T-A	HET
SBS	Chr2	28698786	G-A	HET
SBS	Chr3	16222049	T-C	HET
SBS	Chr3	18253857	A-G	HET
SBS	Chr4	12883482	A-G	HET
SBS	Chr4	3003192	G-T	HET
SBS	Chr5	1106415	G-A	HET
SBS	Chr5	1407266	A-G	HET
SBS	Chr6	11408356	G-C	HET
SBS	Chr6	13759496	T-A	HET
SBS	Chr6	28767432	C-T	HET
SBS	Chr7	23019002	G-A	HET
SBS	Chr7	4216204	G-A	Homo
SBS	Chr8	10660818	C-T	HET
SBS	Chr8	22046459	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g35000
SBS	Chr8	6233874	A-T	HET

Deletions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	7634091	7634099	8
Deletion	Chr7	15520478	15520482	4
Deletion	Chr6	29213001	29242000	28999	5
Deletion	Chr6	30246933	30246968	35	LOC_Os06g49950

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	5268058	5268059	2
Insertion	Chr10	15059864	15059865	2
Insertion	Chr10	8280328	8280328	1
Insertion	Chr11	17738803	17738814	12
Insertion	Chr12	10489113	10489113	1
Insertion	Chr12	27264640	27264640	1
Insertion	Chr5	10007414	10007414	1
Insertion	Chr6	23532596	23532596	1
Insertion	Chr7	3146373	3146418	46
Insertion	Chr7	6208878	6208878	1
Insertion	Chr8	11343372	11343375	4

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	13412563	13640805
Inversion	Chr12	24065753	24065949
Inversion	Chr1	24882022	25630703	2
Inversion	Chr1	24882071	25630708	2

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	4684862	Chr9	604620	LOC_Os10g08630
Translocation	Chr5	5212063	Chr1	19483686	2
Translocation	Chr3	5504283	Chr1	38091882	2
Translocation	Chr8	10070851	Chr5	5212167	2
Translocation	Chr10	13412562	Chr1	34895327
Translocation	Chr11	13520058	Chr5	7847245
Translocation	Chr10	13640591	Chr1	34894924
Translocation	Chr10	13640607	Chr1	34948204	2
Translocation	Chr10	13640774	Chr1	34645418	2
Translocation	Chr12	14638792	Chr3	31101457
Translocation	Chr9	17215962	Chr2	16057128
Translocation	Chr11	19390853	Chr2	23245369	LOC_Os11g32820
Translocation	Chr11	27705691	Chr5	23588188	2

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