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Mutant Information

Mutant Name	FN2081-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2081-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13725556	C-T	HET
SBS	Chr1	29124375	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g50700
SBS	Chr1	34204098	T-A	HET
SBS	Chr2	1038263	T-A	HET
SBS	Chr2	2712800	C-T	HET
SBS	Chr2	10469113	G-T	Homo
SBS	Chr2	15225342	T-G	HET
SBS	Chr3	22432170	G-A	Homo
SBS	Chr4	5447434	C-T	Homo
SBS	Chr4	10534696	C-A	Homo
SBS	Chr4	12010944	A-T	Homo
SBS	Chr5	7815406	T-G	HET
SBS	Chr6	23719238	T-A	Homo
SBS	Chr6	23719239	G-A	Homo
SBS	Chr7	4011358	C-A	HET
SBS	Chr7	6368225	C-G	Homo
SBS	Chr8	8920364	T-A	HET
SBS	Chr8	9372093	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g15400
SBS	Chr8	10766925	C-T	HET
SBS	Chr9	9592814	C-T	Homo
SBS	Chr11	356534	G-A	HET
SBS	Chr11	1376711	C-A	HET
SBS	Chr11	1836242	G-C	HET
SBS	Chr11	8604839	G-T	HET
SBS	Chr11	9095336	A-C	HET
SBS	Chr11	13229682	C-G	HET
SBS	Chr11	14894212	G-A	HET
SBS	Chr12	13453602	G-T	Homo
SBS	Chr12	17583050	T-A	Homo
SBS	Chr12	17583051	G-T	Homo
SBS	Chr12	27446979	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g44280

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	162206	162207	1
Deletion	Chr2	1271720	1271722	2
Deletion	Chr12	2164219	2164221	2	LOC_Os12g04990
Deletion	Chr10	2825766	2825770	4
Deletion	Chr5	3051308	3051321	13
Deletion	Chr10	3232539	3232540	1
Deletion	Chr10	4570001	4614000	43999	10
Deletion	Chr10	4623001	4807000	183999	35
Deletion	Chr12	6289524	6289531	7
Deletion	Chr9	7123190	7123191	1
Deletion	Chr1	7247455	7247459	4
Deletion	Chr8	8572179	8572181	2
Deletion	Chr11	9331006	9331009	3
Deletion	Chr2	10074660	10074661	1
Deletion	Chr4	11145276	11145279	3	LOC_Os04g19990
Deletion	Chr7	11273427	11273439	12
Deletion	Chr2	11409212	11409213	1
Deletion	Chr6	16130001	16148000	17999	3
Deletion	Chr4	17272001	17287000	14999	6
Deletion	Chr8	20049400	20049405	5
Deletion	Chr10	20234187	20234246	59
Deletion	Chr1	22524450	22524451	1
Deletion	Chr7	27070679	27070700	21
Deletion	Chr5	27949040	27949041	1
Deletion	Chr3	28365660	28365672	12

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	15372618	15372620	3
Insertion	Chr5	9992062	9992063	2
Insertion	Chr5	24882841	24882865	25

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	5779287	Chr8	19753812
Translocation	Chr11	7078606	Chr7	17406960	2
Translocation	Chr10	15476031	Chr3	18904885
Translocation	Chr5	20828151	Chr4	31852383
Translocation	Chr6	23596864	Chr2	18700002

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