Search Results


Mutant Information

Mutant NameFN2083-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2083-S Alignment File
Seed AvailabilityYes [Order Seeds]
Phenotype
  • TO:0000430 (Germination Rate) = Normal (Between 75% and 125%)
For more information, please see this phenotype file
Mapping
(Hover to Zoom-In)


Variant Information

Single base substitutions: 87
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr11855159A-GHETNON_SYNONYMOUS_CODINGLOC_Os01g04200
SBSChr13784148T-GHETNON_SYNONYMOUS_CODINGLOC_Os01g07860
SBSChr17216143C-THET
SBSChr18484389C-THomo
SBSChr112771620G-AHET
SBSChr114719711G-AHET
SBSChr116831010A-GHET
SBSChr120144080C-THET
SBSChr125847412G-AHET
SBSChr127404544A-GHET
SBSChr127464939G-CHET
SBSChr127464983G-AHET
SBSChr130524437C-GHomo
SBSChr136498695C-THET
SBSChr137059067G-AHET
SBSChr21423823G-AHET
SBSChr215751948G-AHET
SBSChr215751961T-CHET
SBSChr228494228C-THET
SBSChr230508335G-AHET
SBSChr310129673C-AHomo
SBSChr313375783C-THET
SBSChr320055372G-AHET
SBSChr47867609C-THomo
SBSChr414848807C-THET
SBSChr415028575C-AHomo
SBSChr416100983T-CHET
SBSChr422199645G-THET
SBSChr425560512C-THET
SBSChr435376485A-THomo
SBSChr5726889G-AHET
SBSChr53304647A-GHomo
SBSChr54914848A-CHET
SBSChr510291856T-AHET
SBSChr511479422A-GHET
SBSChr511479438A-THET
SBSChr516150298A-GHET
SBSChr521239616G-THET
SBSChr524237569G-AHET
SBSChr61671586C-GHET
SBSChr61671610A-THET
SBSChr63508989T-CHET
SBSChr68147442A-THET
SBSChr611823894C-THET
SBSChr614478097G-AHET
SBSChr615741785C-THET
SBSChr620624215G-THET
SBSChr625923955C-GHET
SBSChr628837890A-CHET
SBSChr74839530A-THomoNON_SYNONYMOUS_CODINGLOC_Os07g09230
SBSChr74839531G-THomoNON_SYNONYMOUS_CODINGLOC_Os07g09230
SBSChr77844806C-THomo
SBSChr712383978A-THETNON_SYNONYMOUS_CODINGLOC_Os07g22180
SBSChr713794517G-AHET
SBSChr716190470G-AHET
SBSChr719619722C-GHET
SBSChr722687172G-AHomo
SBSChr8644715G-THET
SBSChr82558168T-CHET
SBSChr85027002C-GHomo
SBSChr811741387T-CHET
SBSChr812995045A-GHET
SBSChr822686612C-THomo
SBSChr91518553A-GHET
SBSChr103391037T-CHET
SBSChr103525264G-AHomo
SBSChr103694254A-CHET
SBSChr103694259C-THET
SBSChr105113618G-THET
SBSChr105356943A-GHET
SBSChr107799550T-CHET
SBSChr108153323C-AHET
SBSChr1021301983C-GHET
SBSChr1022791897A-GHET
SBSChr1022791933A-GHET
SBSChr11214474A-GHET
SBSChr112724187C-THETNON_SYNONYMOUS_CODINGLOC_Os11g05840
SBSChr117382977C-AHETNON_SYNONYMOUS_CODINGLOC_Os11g13480
SBSChr1113120415G-AHET
SBSChr1115039403C-GHET
SBSChr123902785A-THET
SBSChr124241547T-CHET
SBSChr129993112C-THETNON_SYNONYMOUS_CODINGLOC_Os12g17424
SBSChr1215960042G-AHET
SBSChr1216696532T-CHomo
SBSChr1218213559A-GHomo
SBSChr1222896337C-THET

Deletions: 76
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr625929259312
DeletionChr433200332033LOC_Os04g01040
DeletionChr661284612862
DeletionChr86447676447681
DeletionChr117285957286049
DeletionChr97879587879591
DeletionChr10105201910520201
DeletionChr12205598620559959LOC_Os12g04810
DeletionChr4257132825713302LOC_Os04g05160
DeletionChr82814424281444622
DeletionChr73638240363825515
DeletionChr1447371644737171
DeletionChr10551421855142224
DeletionChr4567172256717231
DeletionChr8593523259352331
DeletionChr106077337607734710
DeletionChr7615934561593461
DeletionChr56180053618006815LOC_Os05g11030
DeletionChr5641138164113821
DeletionChr10647378064737811
DeletionChr10742831074283111
DeletionChr7799487879948791
DeletionChr1081072938107458165
DeletionChr12938415593841561LOC_Os12g16390
DeletionChr10945932394593263LOC_Os10g18650
DeletionChr7959268495926862
DeletionChr3964458496445884
DeletionChr3999945499994551
DeletionChr710063198100632002
DeletionChr511479466114794693
DeletionChr8117413591174137011
DeletionChr511750352117503531
DeletionChr121206168412061849165
DeletionChr1112082915120829183
DeletionChr1112087324120873273
DeletionChr1112087648120876513
DeletionChr1112088618120886213
DeletionChr1112090236120902393
DeletionChr1112091963120919663
DeletionChr1112092287120922903
DeletionChr1112099993120999963
DeletionChr1112114930121149311
DeletionChr111218355812183723165
DeletionChr11121854561218546610
DeletionChr111218841212188567155
DeletionChr111218880312188968165
DeletionChr111228071912280875156
DeletionChr11122808211228083110
DeletionChr512482362124823631
DeletionChr612581064125810651
DeletionChr1112998861129988621LOC_Os11g22600
DeletionChr1131813081318132517
DeletionChr714230139142301401
DeletionChr614325014143250151LOC_Os06g24440
DeletionChr1151314471513145912
DeletionChr61543568515435840155
DeletionChr61547268415472838154
DeletionChr515739566157395671
DeletionChr515768844157688484
DeletionChr816938997169389981
DeletionChr1017567500175675011
DeletionChr1019174111191741187
DeletionChr1019591247195912481
DeletionChr5196062501960628939
DeletionChr10201447702014478010
DeletionChr822383001223910007999LOC_Os08g35520
DeletionChr623589585235895927LOC_Os06g39740
DeletionChr527014170270141711
DeletionChr128605757286057658LOC_Os01g49820
DeletionChr328955933289559352
DeletionChr529913765299137661
DeletionChr431506001315060065LOC_Os04g52900
DeletionChr233527278335272879
DeletionChr334061067340610681
DeletionChr434401570344015744
DeletionChr136315307363153081LOC_Os01g62710

Insertions: 44
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr122814630228146301
InsertionChr215353842153538509LOC_Os02g26130image
InsertionChr3489841048984112
InsertionChr41291101291156LOC_Os04g01170image
InsertionChr598687998689416
InsertionChr510837772108377732
InsertionChr6102677710267782
InsertionChr718542674185426741
InsertionChr728067731280677311
InsertionChr12390284739028548
InsertionChr1215960071159600788
InsertionChr2271183227118321
InsertionChr2745856274585665
InsertionChr211921926119219261
InsertionChr3245623224562376
InsertionChr319830787198307871
InsertionChr4193560419356041
InsertionChr4231321723132182
InsertionChr4371286437128641
InsertionChr4155190581551907922
InsertionChr433089561330895611
InsertionChr5641104664110461
InsertionChr5996614699661461
InsertionChr511924539119245391
InsertionChr515014899150148991
InsertionChr6132499813249981
InsertionChr615432468154324692
InsertionChr7517259051725901
InsertionChr7965633996563391
InsertionChr7970473697047361
InsertionChr811542155115421551
InsertionChr9217152721715271
InsertionChr915193103151931042
InsertionChr10140210914021091
InsertionChr10228634822863481
InsertionChr10316574331657431
InsertionChr1010201501102015022
InsertionChr115881665881661
InsertionChr11572244957224491
InsertionChr1114925446149254461
InsertionChr1212007892120078921
InsertionChr1212008608120086081
InsertionChr1214707550147075501
InsertionChr1220925790209257901

Inversions: 17
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr8108621515451802
InversionChr815452191697912LOC_Os08g03330
InversionChr11664182868331882
InversionChr381373528137582
InversionChr41463256815191024
InversionChr41463718715186372
InversionChr81646984416478706
InversionChr816811507172320802
InversionChr117167853175355442
InversionChr122053539120535546
InversionChr122053540520535687
InversionChr122053545720535673
InversionChr122053563720535890
InversionChr233243265332765092
InversionChr23456628134742311
InversionChr234958307358673602
InversionChr235535974358673462

Translocations: 206
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr74652Chr143269333
TranslocationChr6428097Chr323730051LOC_Os06g01730
TranslocationChr12671410Chr612027889
TranslocationChr9774710Chr710624067
TranslocationChr81144285Chr2135846252
TranslocationChr101329090Chr3133743632
TranslocationChr121396393Chr413589841LOC_Os12g03520
TranslocationChr121482576Chr29635655LOC_Os12g03680
TranslocationChr41682394Chr221394561
TranslocationChr42085444Chr127847911
TranslocationChr122109513Chr994692652
TranslocationChr82229773Chr611323202
TranslocationChr102330287Chr465258682
TranslocationChr92459500Chr5179369592
TranslocationChr72818382Chr3151389392
TranslocationChr82850427Chr2105222852
TranslocationChr113129576Chr618189969
TranslocationChr93377342Chr112947157
TranslocationChr103492925Chr84323596
TranslocationChr83916355Chr622852382
TranslocationChr73947144Chr14203057
TranslocationChr104089602Chr614634633
TranslocationChr94335219Chr321467848
TranslocationChr104779276Chr419119457LOC_Os10g08830
TranslocationChr34985992Chr13153037LOC_Os03g09970
TranslocationChr75048061Chr39459682
TranslocationChr55212063Chr1194836862
TranslocationChr115280224Chr18723407
TranslocationChr105301379Chr614553615LOC_Os10g09800
TranslocationChr105301392Chr216676178LOC_Os10g09800
TranslocationChr105526146Chr4226584582
TranslocationChr105591049Chr128113362
TranslocationChr125660596Chr3202218372
TranslocationChr35698912Chr128231012
TranslocationChr75740075Chr110486858
TranslocationChr75795093Chr510239418
TranslocationChr125851276Chr9223713962
TranslocationChr126164705Chr133964317
TranslocationChr86185627Chr114606600
TranslocationChr106187942Chr618885787LOC_Os10g11170
TranslocationChr96220709Chr89187191LOC_Os09g11220
TranslocationChr86250026Chr325863239
TranslocationChr56362215Chr4161007712
TranslocationChr56366667Chr4160836422
TranslocationChr116585764Chr92169421
TranslocationChr116605074Chr106570963LOC_Os11g11900
TranslocationChr96831616Chr12441039
TranslocationChr116847393Chr916142885LOC_Os11g12260
TranslocationChr116911367Chr77556237LOC_Os11g12360
TranslocationChr67104990Chr139128614LOC_Os06g12980
TranslocationChr127123788Chr9155907322
TranslocationChr57147986Chr310130242
TranslocationChr67305227Chr44507553
TranslocationChr127351820Chr1128275600
TranslocationChr107460292Chr8167838402
TranslocationChr127498313Chr226973921
TranslocationChr87695321Chr3289697742
TranslocationChr117769660Chr142122292
TranslocationChr87800175Chr110975704LOC_Os08g13130
TranslocationChr107833353Chr4225514302
TranslocationChr97836052Chr510185767
TranslocationChr87958286Chr18713315
TranslocationChr47970754Chr318114923LOC_Os04g14210
TranslocationChr128009851Chr210396399
TranslocationChr118062078Chr55528692
TranslocationChr108067885Chr6144886952
TranslocationChr98086360Chr511371628
TranslocationChr98290041Chr611646417
TranslocationChr88401669Chr58821800
TranslocationChr58550676Chr29635650
TranslocationChr128582209Chr1191695922
TranslocationChr128582365Chr1191694902
TranslocationChr118791992Chr3123350212
TranslocationChr58977839Chr127522732
TranslocationChr98994439Chr6226066612
TranslocationChr99084944Chr516170392
TranslocationChr89498577Chr310131088
TranslocationChr129694988Chr321846276
TranslocationChr99749567Chr211652224LOC_Os09g15950
TranslocationChr99749598Chr518014642LOC_Os09g15950
TranslocationChr810047866Chr224296547
TranslocationChr310134117Chr17229198
TranslocationChr1010189304Chr414595105
TranslocationChr1110228791Chr133544813
TranslocationChr410606617Chr3169134022
TranslocationChr1110672596Chr8109891732
TranslocationChr510723114Chr3195915612
TranslocationChr810934450Chr26633152LOC_Os08g17820
TranslocationChr1211315681Chr1229577602
TranslocationChr1111522648Chr211770701
TranslocationChr811688396Chr213609369
TranslocationChr812465044Chr3182171482
TranslocationChr612693578Chr12810083LOC_Os06g21950
TranslocationChr1112699600Chr714859316LOC_Os11g22130
TranslocationChr1012804970Chr19105110
TranslocationChr712861042Chr625504439
TranslocationChr512865027Chr210544219
TranslocationChr1012990743Chr713127552
TranslocationChr713124631Chr618802569LOC_Os07g23290
TranslocationChr813239555Chr3363779822
TranslocationChr913255684Chr83855369
TranslocationChr1213280467Chr410536796
TranslocationChr813509687Chr213278347
TranslocationChr913579760Chr432799901
TranslocationChr313643248Chr18162411
TranslocationChr713703237Chr128211195
TranslocationChr513773573Chr217860328LOC_Os05g23940
TranslocationChr713841434Chr68521025
TranslocationChr714040643Chr427176699
TranslocationChr714493898Chr1413512742
TranslocationChr814511123Chr7242068462
TranslocationChr1114909272Chr216769651LOC_Os11g26070
TranslocationChr915058690Chr124058398
TranslocationChr815195663Chr413175658
TranslocationChr1015557623Chr325259016
TranslocationChr915900307Chr625107112
TranslocationChr1115952959Chr711854568
TranslocationChr1216084273Chr317117064
TranslocationChr616399197Chr226377481
TranslocationChr216489317Chr1260612622
TranslocationChr216489480Chr1260614572
TranslocationChr416492113Chr25772837
TranslocationChr716499538Chr431528562
TranslocationChr1116502082Chr111048388
TranslocationChr1116718925Chr218271728
TranslocationChr1116718934Chr7118272102
TranslocationChr416749684Chr1140328322
TranslocationChr1216886221Chr1182628742
TranslocationChr716953676Chr6344942
TranslocationChr816997394Chr512864926
TranslocationChr716998626Chr4225513342
TranslocationChr417080295Chr281203092
TranslocationChr1217386173Chr817758565
TranslocationChr617726556Chr213607667
TranslocationChr417900001Chr128199591
TranslocationChr817987884Chr6947778
TranslocationChr1018227673Chr420831016
TranslocationChr918311696Chr139198063LOC_Os09g30120
TranslocationChr1018590833Chr420493917LOC_Os10g34810
TranslocationChr218616639Chr133544814
TranslocationChr1018634842Chr8278362482
TranslocationChr1218646222Chr331353118
TranslocationChr918650076Chr4228971902
TranslocationChr1118671996Chr89835158LOC_Os11g31810
TranslocationChr1218703223Chr1123936714
TranslocationChr1218707997Chr122266837
TranslocationChr1018743790Chr217055470
TranslocationChr218767861Chr13394968
TranslocationChr919008767Chr828326482
TranslocationChr619287301Chr429625990
TranslocationChr219416460Chr1186869162
TranslocationChr1219773320Chr411189093
TranslocationChr819792891Chr6254383472
TranslocationChr419870333Chr3153227362
TranslocationChr1120097362Chr123676403
TranslocationChr820175161Chr627915355
TranslocationChr220267717Chr124514253
TranslocationChr1220501398Chr107970210
TranslocationChr820606597Chr224343538
TranslocationChr720719221Chr694972972
TranslocationChr220805949Chr123519031
TranslocationChr920826156Chr224543591
TranslocationChr1120842004Chr103536503
TranslocationChr721056564Chr124525281
TranslocationChr821203280Chr4186566782
TranslocationChr821330643Chr124311715
TranslocationChr1021377837Chr6160555832
TranslocationChr1221541383Chr10227335962
TranslocationChr1022201796Chr214983935LOC_Os10g41310
TranslocationChr922299718Chr43249560
TranslocationChr822489831Chr614875440
TranslocationChr822489935Chr614875230
TranslocationChr522549691Chr142158310
TranslocationChr1122975640Chr218690725
TranslocationChr1223212713Chr213396947
TranslocationChr1223372595Chr431945859
TranslocationChr623454702Chr219680901
TranslocationChr623531688Chr335733891
TranslocationChr1124005116Chr28611394LOC_Os11g40249
TranslocationChr824007575Chr3195915612
TranslocationChr824077244Chr225044700
TranslocationChr1224172806Chr112419850
TranslocationChr724230193Chr418481617
TranslocationChr1224232917Chr87749923
TranslocationChr224343623Chr127980073
TranslocationChr1124456863Chr623126020
TranslocationChr825167736Chr217587016
TranslocationChr525595507Chr112962558
TranslocationChr425756872Chr3112248142
TranslocationChr1126067192Chr126099203
TranslocationChr526162850Chr3226013312
TranslocationChr226403809Chr125573869
TranslocationChr1226918410Chr342678802
TranslocationChr1226993312Chr142630901
TranslocationChr427165567Chr125573869
TranslocationChr727778996Chr627804710
TranslocationChr1127989898Chr91170742
TranslocationChr1128160652Chr514142185LOC_Os11g46880
TranslocationChr1128268004Chr331985112
TranslocationChr828326483Chr53288385
TranslocationChr1128407988Chr213043311LOC_Os11g47240
TranslocationChr828428258Chr529808260
TranslocationChr430319018Chr214025720LOC_Os04g51190
TranslocationChr331169793Chr141499150
TranslocationChr431648192Chr331453198LOC_Os04g53130
TranslocationChr334354439Chr218055304