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Mutant Information

Mutant NameFN2083-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2083-S Alignment File
Seed AvailabilityYes [Order Seeds]
Phenotype
  • TO:0000430 (Germination Rate) = Normal (Between 75% and 125%)
For more information, please see this phenotype file
Mapping
(Hover to Zoom-In)


Variant Information

Single base substitutions: 87
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr112771620G-AHET
SBSChr114719711G-AHET
SBSChr116831010A-GHET
SBSChr11855159A-GHETNON_SYNONYMOUS_CODINGLOC_Os01g04200
SBSChr120144080C-THET
SBSChr125847412G-AHET
SBSChr127404544A-GHET
SBSChr127464939G-CHET
SBSChr127464983G-AHET
SBSChr130524437C-GHomo
SBSChr136498695C-THET
SBSChr137059067G-AHET
SBSChr13784148T-GHETNON_SYNONYMOUS_CODINGLOC_Os01g07860
SBSChr17216143C-THET
SBSChr18484389C-THomo
SBSChr1021301983C-GHET
SBSChr1022791897A-GHET
SBSChr1022791933A-GHET
SBSChr103391037T-CHET
SBSChr103525264G-AHomo
SBSChr103694254A-CHET
SBSChr103694259C-THET
SBSChr105113618G-THET
SBSChr105356943A-GHET
SBSChr107799550T-CHET
SBSChr108153323C-AHET
SBSChr1113120415G-AHET
SBSChr1115039403C-GHET
SBSChr11214474A-GHET
SBSChr112724187C-THETNON_SYNONYMOUS_CODINGLOC_Os11g05840
SBSChr117382977C-AHETNON_SYNONYMOUS_CODINGLOC_Os11g13480
SBSChr1215960042G-AHET
SBSChr1216696532T-CHomo
SBSChr1218213559A-GHomo
SBSChr1222896337C-THET
SBSChr123902785A-THET
SBSChr124241547T-CHET
SBSChr129993112C-THETNON_SYNONYMOUS_CODINGLOC_Os12g17424
SBSChr21423823G-AHET
SBSChr215751948G-AHET
SBSChr215751961T-CHET
SBSChr228494228C-THET
SBSChr230508335G-AHET
SBSChr310129673C-AHomo
SBSChr313375783C-THET
SBSChr320055372G-AHET
SBSChr414848807C-THET
SBSChr415028575C-AHomo
SBSChr416100983T-CHET
SBSChr422199645G-THET
SBSChr425560512C-THET
SBSChr435376485A-THomo
SBSChr47867609C-THomo
SBSChr510291856T-AHET
SBSChr511479422A-GHET
SBSChr511479438A-THET
SBSChr516150298A-GHET
SBSChr521239616G-THET
SBSChr524237569G-AHET
SBSChr53304647A-GHomo
SBSChr54914848A-CHET
SBSChr5726889G-AHET
SBSChr611823894C-THET
SBSChr614478097G-AHET
SBSChr615741785C-THET
SBSChr61671586C-GHET
SBSChr61671610A-THET
SBSChr620624215G-THET
SBSChr625923955C-GHET
SBSChr628837890A-CHET
SBSChr63508989T-CHET
SBSChr68147442A-THET
SBSChr712383978A-THETNON_SYNONYMOUS_CODINGLOC_Os07g22180
SBSChr713794517G-AHET
SBSChr716190470G-AHET
SBSChr719619722C-GHET
SBSChr722687172G-AHomo
SBSChr74839530A-THomoNON_SYNONYMOUS_CODINGLOC_Os07g09230
SBSChr74839531G-THomoNON_SYNONYMOUS_CODINGLOC_Os07g09230
SBSChr77844806C-THomo
SBSChr811741387T-CHET
SBSChr812995045A-GHET
SBSChr822686612C-THomo
SBSChr82558168T-CHET
SBSChr85027002C-GHomo
SBSChr8644715G-THET
SBSChr91518553A-GHET

Deletions: 76
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr625929259312
DeletionChr433200332033LOC_Os04g01040
DeletionChr661284612862
DeletionChr86447676447681
DeletionChr117285957286049
DeletionChr97879587879591
DeletionChr10105201910520201
DeletionChr12205598620559959LOC_Os12g04810
DeletionChr4257132825713302LOC_Os04g05160
DeletionChr82814424281444622
DeletionChr73638240363825515
DeletionChr1447371644737171
DeletionChr10551421855142224
DeletionChr4567172256717231
DeletionChr8593523259352331
DeletionChr106077337607734710
DeletionChr7615934561593461
DeletionChr56180053618006815LOC_Os05g11030
DeletionChr5641138164113821
DeletionChr10647378064737811
DeletionChr10742831074283111
DeletionChr7799487879948791
DeletionChr1081072938107458165
DeletionChr12938415593841561LOC_Os12g16390
DeletionChr10945932394593263LOC_Os10g18650
DeletionChr7959268495926862
DeletionChr3964458496445884
DeletionChr3999945499994551
DeletionChr710063198100632002
DeletionChr511479466114794693
DeletionChr8117413591174137011
DeletionChr511750352117503531
DeletionChr121206168412061849165
DeletionChr1112082915120829183
DeletionChr1112087324120873273
DeletionChr1112087648120876513
DeletionChr1112088618120886213
DeletionChr1112090236120902393
DeletionChr1112091963120919663
DeletionChr1112092287120922903
DeletionChr1112099993120999963
DeletionChr1112114930121149311
DeletionChr111218355812183723165
DeletionChr11121854561218546610
DeletionChr111218841212188567155
DeletionChr111218880312188968165
DeletionChr111228071912280875156
DeletionChr11122808211228083110
DeletionChr512482362124823631
DeletionChr612581064125810651
DeletionChr1112998861129988621LOC_Os11g22600
DeletionChr1131813081318132517
DeletionChr714230139142301401
DeletionChr614325014143250151LOC_Os06g24440
DeletionChr1151314471513145912
DeletionChr61543568515435840155
DeletionChr61547268415472838154
DeletionChr515739566157395671
DeletionChr515768844157688484
DeletionChr816938997169389981
DeletionChr1017567500175675011
DeletionChr1019174111191741187
DeletionChr1019591247195912481
DeletionChr5196062501960628939
DeletionChr10201447702014478010
DeletionChr822383001223910007999LOC_Os08g35520
DeletionChr623589585235895927LOC_Os06g39740
DeletionChr527014170270141711
DeletionChr128605757286057658LOC_Os01g49820
DeletionChr328955933289559352
DeletionChr529913765299137661
DeletionChr431506001315060065LOC_Os04g52900
DeletionChr233527278335272879
DeletionChr334061067340610681
DeletionChr434401570344015744
DeletionChr136315307363153081LOC_Os01g62710

Insertions: 44
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr122814630228146301
InsertionChr1010201501102015022
InsertionChr10140210914021091
InsertionChr10228634822863481
InsertionChr10316574331657431
InsertionChr1114925446149254461
InsertionChr11572244957224491
InsertionChr115881665881661
InsertionChr1212007892120078921
InsertionChr1212008608120086081
InsertionChr1214707550147075501
InsertionChr1215960071159600788
InsertionChr1220925790209257901
InsertionChr12390284739028548
InsertionChr211921926119219261
InsertionChr215353842153538509LOC_Os02g26130image
InsertionChr2271183227118321
InsertionChr2745856274585665
InsertionChr319830787198307871
InsertionChr3245623224562376
InsertionChr3489841048984112
InsertionChr41291101291156LOC_Os04g01170image
InsertionChr4155190581551907922
InsertionChr4193560419356041
InsertionChr4231321723132182
InsertionChr433089561330895611
InsertionChr4371286437128641
InsertionChr510837772108377732
InsertionChr511924539119245391
InsertionChr515014899150148991
InsertionChr5641104664110461
InsertionChr598687998689416
InsertionChr5996614699661461
InsertionChr6102677710267782
InsertionChr6132499813249981
InsertionChr615432468154324692
InsertionChr718542674185426741
InsertionChr728067731280677311
InsertionChr7517259051725901
InsertionChr7965633996563391
InsertionChr7970473697047361
InsertionChr811542155115421551
InsertionChr915193103151931042
InsertionChr9217152721715271

Inversions: 17
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr8108621515451802
InversionChr815452191697912LOC_Os08g03330
InversionChr11664182868331882
InversionChr381373528137582
InversionChr41463256815191024
InversionChr41463718715186372
InversionChr81646984416478706
InversionChr816811507172320802
InversionChr117167853175355442
InversionChr122053539120535546
InversionChr122053540520535687
InversionChr122053545720535673
InversionChr122053563720535890
InversionChr233243265332765092
InversionChr23456628134742311
InversionChr234958307358673602
InversionChr235535974358673462

Translocations: 206
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr74652Chr143269333
TranslocationChr6428097Chr323730051LOC_Os06g01730
TranslocationChr12671410Chr612027889
TranslocationChr9774710Chr710624067
TranslocationChr81144285Chr2135846252
TranslocationChr101329090Chr3133743632
TranslocationChr121396393Chr413589841LOC_Os12g03520
TranslocationChr121482576Chr29635655LOC_Os12g03680
TranslocationChr41682394Chr221394561
TranslocationChr42085444Chr127847911
TranslocationChr122109513Chr994692652
TranslocationChr82229773Chr611323202
TranslocationChr102330287Chr465258682
TranslocationChr92459500Chr5179369592
TranslocationChr72818382Chr3151389392
TranslocationChr82850427Chr2105222852
TranslocationChr113129576Chr618189969
TranslocationChr93377342Chr112947157
TranslocationChr103492925Chr84323596
TranslocationChr83916355Chr622852382
TranslocationChr73947144Chr14203057
TranslocationChr104089602Chr614634633
TranslocationChr94335219Chr321467848
TranslocationChr104779276Chr419119457LOC_Os10g08830
TranslocationChr34985992Chr13153037LOC_Os03g09970
TranslocationChr75048061Chr39459682
TranslocationChr55212063Chr1194836862
TranslocationChr115280224Chr18723407
TranslocationChr105301379Chr614553615LOC_Os10g09800
TranslocationChr105301392Chr216676178LOC_Os10g09800
TranslocationChr105526146Chr4226584582
TranslocationChr105591049Chr128113362
TranslocationChr125660596Chr3202218372
TranslocationChr35698912Chr128231012
TranslocationChr75740075Chr110486858
TranslocationChr75795093Chr510239418
TranslocationChr125851276Chr9223713962
TranslocationChr126164705Chr133964317
TranslocationChr86185627Chr114606600
TranslocationChr106187942Chr618885787LOC_Os10g11170
TranslocationChr96220709Chr89187191LOC_Os09g11220
TranslocationChr86250026Chr325863239
TranslocationChr56362215Chr4161007712
TranslocationChr56366667Chr4160836422
TranslocationChr116585764Chr92169421
TranslocationChr116605074Chr106570963LOC_Os11g11900
TranslocationChr96831616Chr12441039
TranslocationChr116847393Chr916142885LOC_Os11g12260
TranslocationChr116911367Chr77556237LOC_Os11g12360
TranslocationChr67104990Chr139128614LOC_Os06g12980
TranslocationChr127123788Chr9155907322
TranslocationChr57147986Chr310130242
TranslocationChr67305227Chr44507553
TranslocationChr127351820Chr1128275600
TranslocationChr107460292Chr8167838402
TranslocationChr127498313Chr117298369
TranslocationChr87695321Chr3289697742
TranslocationChr117769660Chr142122292
TranslocationChr87800175Chr110975704LOC_Os08g13130
TranslocationChr107833353Chr4225514302
TranslocationChr97836052Chr510185767
TranslocationChr87958286Chr18713315
TranslocationChr47970754Chr318114923LOC_Os04g14210
TranslocationChr128009851Chr210396399
TranslocationChr118062078Chr55528692
TranslocationChr108067885Chr6144886952
TranslocationChr98086360Chr511371628
TranslocationChr98290041Chr611646417
TranslocationChr88401669Chr58821800
TranslocationChr58550676Chr29635650
TranslocationChr128582209Chr1191695922
TranslocationChr128582365Chr1191694902
TranslocationChr118791992Chr3123350212
TranslocationChr58977839Chr127522732
TranslocationChr98994439Chr6226066612
TranslocationChr99084944Chr516170392
TranslocationChr89498577Chr310131088
TranslocationChr129694988Chr321846276
TranslocationChr99749567Chr211652224LOC_Os09g15950
TranslocationChr99749598Chr518014642LOC_Os09g15950
TranslocationChr810047866Chr224296547
TranslocationChr310134117Chr17229198
TranslocationChr1010189304Chr414595105
TranslocationChr1110228791Chr133544813
TranslocationChr410606617Chr3169134022
TranslocationChr1110672596Chr8109891732
TranslocationChr510723114Chr3195915612
TranslocationChr810934450Chr26633152LOC_Os08g17820
TranslocationChr1211315681Chr1229577602
TranslocationChr1111522648Chr211770701
TranslocationChr811688396Chr213609369
TranslocationChr812465044Chr3182171482
TranslocationChr612693578Chr12810083LOC_Os06g21950
TranslocationChr1112699600Chr714859316LOC_Os11g22130
TranslocationChr1012804970Chr19105110
TranslocationChr712861042Chr625504439
TranslocationChr512865027Chr210544219
TranslocationChr1012990743Chr713127552
TranslocationChr713124631Chr618802569LOC_Os07g23290
TranslocationChr813239555Chr3363779822
TranslocationChr913255684Chr83855369
TranslocationChr1213280467Chr410536796
TranslocationChr813509687Chr213278347
TranslocationChr913579760Chr432799901
TranslocationChr313643248Chr18162411
TranslocationChr713703237Chr128211195
TranslocationChr513773573Chr217860328LOC_Os05g23940
TranslocationChr713841434Chr68521025
TranslocationChr714040643Chr427176699
TranslocationChr714493898Chr1413512742
TranslocationChr814511123Chr7242068462
TranslocationChr1114909272Chr216769651LOC_Os11g26070
TranslocationChr915058690Chr124058398
TranslocationChr815195663Chr413175658
TranslocationChr1015557623Chr325259016
TranslocationChr915900307Chr625107112
TranslocationChr1115952959Chr711854568
TranslocationChr1216084273Chr317117064
TranslocationChr616399197Chr226377481
TranslocationChr216489317Chr1260612622
TranslocationChr216489480Chr1260614572
TranslocationChr416492113Chr25772837
TranslocationChr716499538Chr431528562
TranslocationChr1116502082Chr111048388
TranslocationChr1116718925Chr218271728
TranslocationChr1116718934Chr7118272102
TranslocationChr416749684Chr1140328322
TranslocationChr1216886221Chr1182628742
TranslocationChr716953676Chr6344942
TranslocationChr816997394Chr512864926
TranslocationChr716998626Chr4225513342
TranslocationChr417080295Chr281203092
TranslocationChr1217386173Chr817758565
TranslocationChr617726556Chr213607667
TranslocationChr417900001Chr128199591
TranslocationChr817987884Chr6947778
TranslocationChr1018227673Chr420831016
TranslocationChr918311696Chr139198063LOC_Os09g30120
TranslocationChr1018590833Chr420493917LOC_Os10g34810
TranslocationChr218616639Chr133544814
TranslocationChr1018634842Chr8278362482
TranslocationChr1218646222Chr331353118
TranslocationChr918650076Chr4228971902
TranslocationChr1118671996Chr89835158LOC_Os11g31810
TranslocationChr1218703223Chr1123936714
TranslocationChr1218707997Chr122266837
TranslocationChr1018743790Chr217055470
TranslocationChr218767861Chr13394968
TranslocationChr919008767Chr828326482
TranslocationChr619287301Chr429625990
TranslocationChr219416460Chr1186869162
TranslocationChr1219773320Chr411189093
TranslocationChr819792891Chr6254383472
TranslocationChr419870333Chr3153227362
TranslocationChr1120097362Chr123676403
TranslocationChr820175161Chr627915355
TranslocationChr220267717Chr124514253
TranslocationChr1220501398Chr107970210
TranslocationChr820606597Chr224343538
TranslocationChr720719221Chr694972972
TranslocationChr220805949Chr123519031
TranslocationChr920826156Chr224543591
TranslocationChr1120842004Chr103536503
TranslocationChr721056564Chr124525281
TranslocationChr821203280Chr4186566782
TranslocationChr821330643Chr124311715
TranslocationChr1021377837Chr6160555832
TranslocationChr1221541383Chr10227335962
TranslocationChr1022201796Chr214983935LOC_Os10g41310
TranslocationChr922299718Chr43249560
TranslocationChr822489831Chr614875440
TranslocationChr822489935Chr614875230
TranslocationChr522549691Chr142158310
TranslocationChr1122975640Chr218690725
TranslocationChr1223212713Chr213396947
TranslocationChr1223372595Chr431945859
TranslocationChr623454702Chr219680901
TranslocationChr623531688Chr335733891
TranslocationChr1124005116Chr28611394LOC_Os11g40249
TranslocationChr824007575Chr3195915612
TranslocationChr824077244Chr225044700
TranslocationChr1224172806Chr112419850
TranslocationChr724230193Chr418481617
TranslocationChr1224232917Chr87749923
TranslocationChr224343623Chr127980073
TranslocationChr1124456863Chr623126020
TranslocationChr825167736Chr217587016
TranslocationChr525595507Chr112962558
TranslocationChr425756872Chr3112248142
TranslocationChr1126067192Chr126099203
TranslocationChr526162850Chr3226013312
TranslocationChr226403809Chr125573869
TranslocationChr1226918410Chr342678802
TranslocationChr1226993312Chr142630901
TranslocationChr427165567Chr125573869
TranslocationChr727778996Chr627804710
TranslocationChr1127989898Chr91170742
TranslocationChr1128160652Chr514142185LOC_Os11g46880
TranslocationChr1128268004Chr331985112
TranslocationChr828326483Chr53288385
TranslocationChr1128407988Chr213043311LOC_Os11g47240
TranslocationChr828428258Chr529808260
TranslocationChr430319018Chr214025720LOC_Os04g51190
TranslocationChr331169793Chr141499150
TranslocationChr431648192Chr331453198LOC_Os04g53130
TranslocationChr334354439Chr218055304