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Mutant Information

Mutant Name	FN2084-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2084-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22693149	G-A	HET
SBS	Chr1	23610257	C-A	Homo
SBS	Chr1	26418162	G-T	Homo
SBS	Chr1	34061950	A-T	HET
SBS	Chr1	6796453	C-T	HET
SBS	Chr10	16338348	T-C	HET
SBS	Chr11	5813265	G-A	Homo
SBS	Chr12	10403393	C-A	HET
SBS	Chr12	16504527	C-T	HET
SBS	Chr12	16993099	T-C	HET
SBS	Chr12	19808277	C-T	Homo
SBS	Chr3	17954274	G-T	HET
SBS	Chr4	11813290	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g20990
SBS	Chr4	15526854	C-A	HET
SBS	Chr4	2730889	C-A	HET
SBS	Chr5	13857679	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g24040
SBS	Chr5	1678204	A-T	HET
SBS	Chr5	20485892	G-A	HET
SBS	Chr5	21856587	A-T	HET
SBS	Chr7	2183347	G-T	HET
SBS	Chr7	27830801	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g46590
SBS	Chr7	29256247	A-T	HET
SBS	Chr7	8540071	A-G	HET
SBS	Chr8	18273947	G-A	Homo
SBS	Chr8	27746761	C-T	HET
SBS	Chr9	2208603	T-C	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	454332	454333	1
Deletion	Chr11	1204001	1213000	8999	2
Deletion	Chr11	1219495	1219507	12
Deletion	Chr4	2215589	2215592	3
Deletion	Chr4	3036946	3036948	2
Deletion	Chr3	5361001	5375000	13999	2
Deletion	Chr5	7060001	7362000	301999	50
Deletion	Chr5	7263194	7263195	1
Deletion	Chr8	9744489	9744490	1
Deletion	Chr1	15873776	15873779	3
Deletion	Chr2	29130148	29130149	1
Deletion	Chr4	32475248	32475249	1
Deletion	Chr2	34540350	34540351	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	16490000	16490070	71	LOC_Os04g27930
Insertion	Chr4	22273373	22273429	57
Insertion	Chr6	13885049	13885056	8
Insertion	Chr7	27081879	27081880	2
Insertion	Chr8	5022341	5022343	3
Insertion	Chr9	6144438	6144438	1

Inversions: 228

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	75267	75601	LOC_Os03g01110
Inversion	Chr1	170756	170906	LOC_Os01g01350
Inversion	Chr7	519855	520020	LOC_Os07g01860
Inversion	Chr6	540694	540973
Inversion	Chr10	913563	913670	LOC_Os10g02480
Inversion	Chr10	1019583	1019704	LOC_Os10g02640
Inversion	Chr10	1072306	1072524
Inversion	Chr2	1151985	1152138	LOC_Os02g02940
Inversion	Chr5	1160526	1160841
Inversion	Chr3	1180858	1181051
Inversion	Chr7	1234745	1234926	LOC_Os07g03160
Inversion	Chr7	1775385	1775588
Inversion	Chr3	1828612	1828879
Inversion	Chr1	1873095	1873235
Inversion	Chr2	1926126	1926384
Inversion	Chr1	2081721	2081927
Inversion	Chr5	2151609	2151973
Inversion	Chr2	2199271	2199375
Inversion	Chr4	2475883	2476084
Inversion	Chr3	2485073	2485361
Inversion	Chr7	2492903	2493156
Inversion	Chr11	2566629	2566805	LOC_Os11g05650
Inversion	Chr10	2763849	2763999	LOC_Os10g05570
Inversion	Chr10	2913180	2913582	LOC_Os10g05780
Inversion	Chr3	3161818	3162023	LOC_Os03g06290
Inversion	Chr5	3170084	3170189
Inversion	Chr5	3197150	3197443
Inversion	Chr5	3245842	3246032	LOC_Os05g06340
Inversion	Chr12	3363995	3364131	LOC_Os12g06910
Inversion	Chr6	3416433	3416650	LOC_Os06g07130
Inversion	Chr2	3586428	3586890	2
Inversion	Chr10	3702657	3702781	LOC_Os10g07050
Inversion	Chr8	3936537	3936659	LOC_Os08g07020
Inversion	Chr3	3966420	3966605
Inversion	Chr9	4026356	4026832	LOC_Os09g07900
Inversion	Chr9	4027739	4027903	LOC_Os09g07900
Inversion	Chr3	4068071	4068256
Inversion	Chr7	4181220	4181438	LOC_Os07g08190
Inversion	Chr7	4294242	4294597
Inversion	Chr7	4354237	4354392
Inversion	Chr9	4649693	4649986
Inversion	Chr7	4691947	4692235
Inversion	Chr12	4820248	4820503
Inversion	Chr3	4947254	4947563	LOC_Os03g09930
Inversion	Chr2	5003628	5003821
Inversion	Chr5	5034010	5034420
Inversion	Chr3	5115252	5115453
Inversion	Chr5	5276042	5276252	LOC_Os05g09400
Inversion	Chr5	5426509	5426699	LOC_Os05g09620
Inversion	Chr1	5457582	5457924
Inversion	Chr7	5542487	5542745
Inversion	Chr11	5814738	5815100	LOC_Os11g10600
Inversion	Chr4	6095422	6095544
Inversion	Chr4	6321713	6321966
Inversion	Chr1	6324990	6325182
Inversion	Chr3	6452510	6452829
Inversion	Chr7	6600583	6600879	LOC_Os07g11890
Inversion	Chr1	6705384	6705745
Inversion	Chr6	6788803	6789081	2
Inversion	Chr11	6879143	6879361	LOC_Os11g12330
Inversion	Chr1	7047822	7048036
Inversion	Chr2	7157348	7157558
Inversion	Chr7	7230581	7230757	LOC_Os07g12640
Inversion	Chr9	7240508	7241080	LOC_Os09g12650
Inversion	Chr10	7335149	7335373	LOC_Os10g13550
Inversion	Chr10	7412234	7412717	LOC_Os10g13660
Inversion	Chr2	7487052	7487353
Inversion	Chr2	7620353	7620614	LOC_Os02g13965
Inversion	Chr12	7642397	7642524	LOC_Os12g13590
Inversion	Chr1	7753014	7753422	LOC_Os01g13820
Inversion	Chr11	7786280	7786495	2
Inversion	Chr1	7918018	7918207
Inversion	Chr9	7929063	7929232	LOC_Os09g13630
Inversion	Chr1	8048573	8048843	LOC_Os01g14370
Inversion	Chr6	8053208	8053338
Inversion	Chr7	8454511	8454829
Inversion	Chr6	9094312	9094426	LOC_Os06g15990
Inversion	Chr11	9138001	9138349
Inversion	Chr4	9339510	9339688	LOC_Os04g17050
Inversion	Chr1	9891052	9891441	LOC_Os01g17214
Inversion	Chr11	9961616	9962126	LOC_Os11g17799
Inversion	Chr5	10123003	10123181	LOC_Os05g17604
Inversion	Chr6	10843934	10844416	LOC_Os06g19070
Inversion	Chr7	10845699	10845911	LOC_Os07g18300
Inversion	Chr5	10995457	10995772
Inversion	Chr2	11161876	11162357	2
Inversion	Chr10	11477558	11477947
Inversion	Chr6	11492193	11492473	LOC_Os06g20040
Inversion	Chr3	11538505	11538620
Inversion	Chr12	11839641	11839911
Inversion	Chr4	11927436	11927681
Inversion	Chr2	12193081	12193291
Inversion	Chr1	12201286	12201440
Inversion	Chr12	12321597	12321797	2
Inversion	Chr4	12397741	12398126	LOC_Os04g21890
Inversion	Chr8	12434349	12434721	LOC_Os08g20690
Inversion	Chr1	12506520	12506651
Inversion	Chr9	12585733	12586049	LOC_Os09g20910
Inversion	Chr3	12829325	12829455
Inversion	Chr1	12854793	12855005
Inversion	Chr9	12881994	12882209
Inversion	Chr2	13240373	13240531
Inversion	Chr12	13349248	13349390
Inversion	Chr12	13373077	13403852
Inversion	Chr9	13410649	13410882
Inversion	Chr1	13601380	13601724	2
Inversion	Chr1	13664632	13664999	LOC_Os01g24240
Inversion	Chr3	13841498	13841680	LOC_Os03g24339
Inversion	Chr1	13936153	13936476
Inversion	Chr8	14273968	14274099	LOC_Os08g23580
Inversion	Chr10	14324621	14324764	LOC_Os10g27174
Inversion	Chr3	14720899	14721238	2
Inversion	Chr9	14935930	14936100
Inversion	Chr8	15061827	15062109	LOC_Os08g24880
Inversion	Chr3	15414765	15415060	LOC_Os03g26960
Inversion	Chr2	15888593	15888923
Inversion	Chr8	16072816	16073074	2
Inversion	Chr12	16139878	16140088	LOC_Os12g27420
Inversion	Chr5	16155063	16155310
Inversion	Chr11	16216861	16217181
Inversion	Chr2	16224803	16225157
Inversion	Chr4	16572078	16572305	LOC_Os04g28074
Inversion	Chr8	16765875	16766107	LOC_Os08g27460
Inversion	Chr1	17070781	17071067	LOC_Os01g31220
Inversion	Chr9	17150630	17151063
Inversion	Chr9	17186957	17187208	LOC_Os09g28300
Inversion	Chr10	17203666	17203935	2
Inversion	Chr7	17268371	17268692	2
Inversion	Chr5	17340654	17340901	LOC_Os05g29974
Inversion	Chr3	17380565	17380713	LOC_Os03g30460
Inversion	Chr1	17443633	17443969
Inversion	Chr11	17488824	17489292	LOC_Os11g30060
Inversion	Chr4	17558726	17558845
Inversion	Chr10	17610608	17610892	LOC_Os10g33440
Inversion	Chr3	17618776	17619092	LOC_Os03g30934
Inversion	Chr8	17642417	17642876
Inversion	Chr11	17849011	17849213
Inversion	Chr12	17965619	17966079	LOC_Os12g30030
Inversion	Chr9	18012354	18012539	LOC_Os09g29620
Inversion	Chr9	18164207	18164410	LOC_Os09g29870
Inversion	Chr1	18166023	18166184	LOC_Os01g33060
Inversion	Chr6	18202566	18202724	LOC_Os06g31280
Inversion	Chr1	18336182	18336524	LOC_Os01g33260
Inversion	Chr10	18508212	18508393
Inversion	Chr10	18765854	18766140
Inversion	Chr1	18782594	18782937
Inversion	Chr5	18786524	18786698	LOC_Os05g32210
Inversion	Chr9	18810997	18811343
Inversion	Chr1	18931302	18931489	LOC_Os01g34330
Inversion	Chr2	19441350	19441571	LOC_Os02g32730
Inversion	Chr6	19501800	19502039	LOC_Os06g33470
Inversion	Chr6	19585027	19585174	LOC_Os06g33640
Inversion	Chr12	19616724	19616928	LOC_Os12g32499
Inversion	Chr4	19833034	19833310
Inversion	Chr6	19997550	19997774
Inversion	Chr10	20070394	20070931	2
Inversion	Chr10	20070996	20071150	LOC_Os10g37490
Inversion	Chr10	20071268	20071377	LOC_Os10g37490
Inversion	Chr7	20213961	20214098	2
Inversion	Chr12	20468629	20468730
Inversion	Chr10	20892565	20892724
Inversion	Chr11	20968927	20969327
Inversion	Chr9	20990704	20990852	LOC_Os09g36370
Inversion	Chr9	21621411	21621607
Inversion	Chr2	21639074	21639234	LOC_Os02g36020
Inversion	Chr11	21713031	21713255
Inversion	Chr10	21725676	21725871	LOC_Os10g40570
Inversion	Chr6	22250569	22250700	LOC_Os06g37560
Inversion	Chr4	22347475	22347749
Inversion	Chr1	22818519	22818705
Inversion	Chr10	22820436	22820759	LOC_Os10g42400
Inversion	Chr12	23039652	23040115
Inversion	Chr7	23149650	23149810
Inversion	Chr1	23366201	23366469
Inversion	Chr7	23405285	23405417
Inversion	Chr8	23409591	23409748	LOC_Os08g37030
Inversion	Chr2	23589724	23589840
Inversion	Chr4	23599329	23599751	2
Inversion	Chr5	23738804	23739035
Inversion	Chr1	23910011	23910199
Inversion	Chr7	23938062	23938232
Inversion	Chr5	24100066	24100311
Inversion	Chr6	24130481	24130649
Inversion	Chr12	24398007	24398206	LOC_Os12g39560
Inversion	Chr8	24852395	24852613
Inversion	Chr1	24884783	24884951
Inversion	Chr1	24962982	24963083
Inversion	Chr7	25008100	25008270	LOC_Os07g41730
Inversion	Chr11	25301588	25302165
Inversion	Chr11	25301590	25302034
Inversion	Chr11	25301793	25302473
Inversion	Chr12	26069404	26069603
Inversion	Chr11	26305315	26305750	LOC_Os11g43590
Inversion	Chr11	26305483	26305714	LOC_Os11g43590
Inversion	Chr6	26363239	26363642	LOC_Os06g43790
Inversion	Chr6	26383192	26383448
Inversion	Chr6	26497861	26498012	LOC_Os06g43990
Inversion	Chr6	26513341	26513576
Inversion	Chr4	26903583	26904094	LOC_Os04g45460
Inversion	Chr11	26958684	26958801
Inversion	Chr4	26997435	26997793
Inversion	Chr5	27040836	27040988
Inversion	Chr8	27402749	27402919
Inversion	Chr1	27593691	27593809	LOC_Os01g48180
Inversion	Chr6	27824424	27824715	LOC_Os06g45940
Inversion	Chr7	28174675	28174897	LOC_Os07g47110
Inversion	Chr2	28451286	28451391
Inversion	Chr7	28742712	28742827	LOC_Os07g48130
Inversion	Chr6	29793459	29793664	LOC_Os06g49170
Inversion	Chr2	30046623	30047045	LOC_Os02g49130
Inversion	Chr1	30090773	30091038
Inversion	Chr6	30348596	30348732	LOC_Os06g50100
Inversion	Chr4	31130483	31130722	LOC_Os04g52390
Inversion	Chr1	31593843	31594096	LOC_Os01g54930
Inversion	Chr1	32226610	32226888	2
Inversion	Chr4	33159578	33159765
Inversion	Chr2	33456071	33456370
Inversion	Chr1	34394808	34395037
Inversion	Chr3	34428936	34429292
Inversion	Chr1	35180443	35180676
Inversion	Chr3	35555627	35555873	LOC_Os03g62850
Inversion	Chr2	35803806	35804031	LOC_Os02g58560
Inversion	Chr1	36370004	36370111	LOC_Os01g62800
Inversion	Chr1	37960801	37961102
Inversion	Chr1	38368093	38368422
Inversion	Chr1	40929061	40929441	LOC_Os01g70700
Inversion	Chr1	41249138	41249466	LOC_Os01g71280
Inversion	Chr1	42593825	43159146	LOC_Os01g73514

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	3224461	Chr3	5986400	2
Translocation	Chr4	3224464	Chr3	5987046	2
Translocation	Chr6	3477642	Chr1	10062145	2
Translocation	Chr9	5040373	Chr4	1632055
Translocation	Chr8	5818464	Chr1	18686916	2
Translocation	Chr11	14753919	Chr6	9352430
Translocation	Chr12	15578263	Chr1	42594682	2
Translocation	Chr5	15913883	Chr2	15512796
Translocation	Chr4	16584441	Chr2	20382605	LOC_Os04g28090
Translocation	Chr11	17401312	Chr2	4760397	LOC_Os11g29940
Translocation	Chr11	24408147	Chr8	16614773
Translocation	Chr11	24439297	Chr5	21302397

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