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Mutant Information

Mutant Name	FN2086-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2086-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr11	13295729	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g23100
SBS	Chr12	13061048	C-T	Homo
SBS	Chr12	17131003	C-T	HET
SBS	Chr12	1938920	G-A	Homo
SBS	Chr2	21094086	T-A	HET
SBS	Chr2	32467930	T-C	HET
SBS	Chr3	17692955	T-A	Homo
SBS	Chr4	18842667	T-A	Homo
SBS	Chr4	19519915	T-A	HET
SBS	Chr4	19519916	C-A	HET
SBS	Chr4	3172777	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g06110
SBS	Chr4	32522494	C-T	Homo
SBS	Chr5	1778308	T-A	Homo
SBS	Chr5	23726041	C-T	Homo
SBS	Chr5	4881131	T-C	Homo
SBS	Chr6	10613782	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g18720
SBS	Chr6	20441743	T-C	Homo
SBS	Chr6	23863550	C-G	Homo
SBS	Chr6	29615157	G-A	HET
SBS	Chr6	30101760	C-A	HET
SBS	Chr6	9703054	A-T	Homo
SBS	Chr7	15977629	G-A	Homo
SBS	Chr7	16741616	G-A	Homo
SBS	Chr7	29006172	T-C	HET
SBS	Chr8	18041013	C-A	HET
SBS	Chr9	10939086	G-A	HET
SBS	Chr9	20764025	A-T	HET
SBS	Chr9	4377603	A-G	HET
SBS	Chr9	896866	C-T	HET

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	246856	246947	91
Deletion	Chr3	5382665	5382666	1
Deletion	Chr1	6054091	6054094	3
Deletion	Chr7	6451224	6451225	1
Deletion	Chr1	6791229	6791232	3	LOC_Os01g12430
Deletion	Chr3	8565286	8565297	11
Deletion	Chr7	11652348	11652356	8
Deletion	Chr6	12545083	12545084	1	LOC_Os06g21700
Deletion	Chr4	13334794	13334795	1
Deletion	Chr7	13579697	13579698	1
Deletion	Chr4	14683328	14683333	5
Deletion	Chr3	15922515	15922516	1
Deletion	Chr7	16646001	16653000	6999	2
Deletion	Chr7	16646222	16646223	1	LOC_Os07g28450
Deletion	Chr9	17627949	17627950	1	LOC_Os09g29000
Deletion	Chr5	20877264	20877269	5
Deletion	Chr5	26977635	26977636	1
Deletion	Chr4	29140440	29140453	13
Deletion	Chr6	30383402	30383408	6	LOC_Os06g50180
Deletion	Chr3	32117827	32117839	12
Deletion	Chr3	33915588	33915591	3

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	13090408	13090413	6
Insertion	Chr3	9035045	9035045	1	LOC_Os03g16369
Insertion	Chr4	21536977	21536982	6
Insertion	Chr5	29939605	29939611	7
Insertion	Chr7	27766716	27766750	35

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	19066334	Chr11	20662841	LOC_Os12g31650
Translocation	Chr9	20787832	Chr3	15453890	2
Translocation	Chr9	20788019	Chr3	15453884	2

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