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Mutant Information

Mutant Name	FN2092-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2092-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9298103	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g16370
SBS	Chr1	34997646	G-T	Homo
SBS	Chr2	10718451	T-A	HET
SBS	Chr2	20238210	A-G	HET
SBS	Chr2	30450153	A-T	HET
SBS	Chr3	5854946	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g11360
SBS	Chr3	29025815	C-T	HET
SBS	Chr4	16688162	G-T	Homo
SBS	Chr4	21344976	A-T	Homo
SBS	Chr4	23520507	G-T	HET
SBS	Chr4	25995022	G-A	Homo
SBS	Chr5	8448640	T-G	HET
SBS	Chr5	19187674	G-A	HET
SBS	Chr5	21922365	T-C	HET
SBS	Chr6	1566110	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g03890
SBS	Chr7	2355995	C-G	Homo
SBS	Chr7	16941187	C-G	HET
SBS	Chr7	18011209	G-T	HET
SBS	Chr7	22558272	G-T	HET
SBS	Chr10	7186390	T-A	HET
SBS	Chr11	3438951	G-A	HET
SBS	Chr11	8170034	G-A	HET
SBS	Chr11	13504389	A-T	HET
SBS	Chr11	14650319	G-A	HET
SBS	Chr11	16500140	A-C	HET
SBS	Chr11	16693077	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g28810
SBS	Chr11	18884154	G-C	HET
SBS	Chr11	21901759	C-T	HET
SBS	Chr11	25295230	C-T	Homo
SBS	Chr12	18007198	C-T	HET

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2467776	2467784	8
Deletion	Chr2	5401782	5401784	2
Deletion	Chr7	14708255	14708256	1	LOC_Os07g25650
Deletion	Chr12	16189001	16352000	162999	21
Deletion	Chr12	16356001	16438000	81999	15
Deletion	Chr12	16445001	16604000	158999	20
Deletion	Chr12	17292001	17345000	52999	5
Deletion	Chr7	17961306	17961307	1	LOC_Os07g30350
Deletion	Chr8	18552494	18552495	1
Deletion	Chr7	18615368	18615369	1
Deletion	Chr2	34330544	34330550	6

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	25347680	25347681	2
Insertion	Chr2	33813349	33813349	1
Insertion	Chr6	23090979	23090979	1	LOC_Os06g38920
Insertion	Chr11	4899147	4899193	47

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	5105752	5106041
Inversion	Chr2	11343242	11343746	LOC_Os02g19420
Inversion	Chr7	17675265	17675511
Inversion	Chr11	17871464	17871649
Inversion	Chr7	25571199	25571358	LOC_Os07g42714
Inversion	Chr2	27834690	27835214
Inversion	Chr4	30623710	30623883	LOC_Os04g51690
Inversion	Chr1	41771457	41771690

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	10607643	Chr6	29849889	LOC_Os10g20960
Translocation	Chr10	10612457	Chr6	29849873	LOC_Os10g20960
Translocation	Chr12	17925396	Chr6	8365091	LOC_Os12g29990
Translocation	Chr12	17925839	Chr6	8365092	LOC_Os12g29990
Translocation	Chr12	19066299	Chr4	8026438	LOC_Os12g31650

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