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| Mutant Information |
|---|
| Mutant Name | FN2093-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2093-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 14
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15833314 | A-T | Homo | ||
| SBS | Chr1 | 15833315 | A-T | Homo | ||
| SBS | Chr10 | 6322841 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os10g11400 |
| SBS | Chr11 | 1041060 | C-A | HET | ||
| SBS | Chr11 | 1084471 | C-A | HET | ||
| SBS | Chr12 | 11780402 | C-T | HET | ||
| SBS | Chr12 | 24445120 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g39610 |
| SBS | Chr2 | 3535851 | C-A | HET | ||
| SBS | Chr4 | 21916883 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g35950 |
| SBS | Chr4 | 21916884 | G-T | HET | STOP_GAINED | LOC_Os04g35950 |
| SBS | Chr4 | 25154066 | T-A | Homo | ||
| SBS | Chr7 | 3522279 | G-A | HET | ||
| SBS | Chr8 | 14687970 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g24330 |
| SBS | Chr9 | 2997757 | G-A | HET |
Deletions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 12517506 | 12517519 | 13 | |
| Deletion | Chr6 | 26149694 | 26149697 | 3 | |
| Deletion | Chr4 | 29551232 | 29551348 | 116 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 12114282 | 12114334 | 53 | |
| Insertion | Chr12 | 11689907 | 11689907 | 1 | |
| Insertion | Chr5 | 1268956 | 1268957 | 2 |
Inversions: 244
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 149678 | 150071 | |
| Inversion | Chr4 | 210196 | 210486 | |
| Inversion | Chr4 | 242996 | 243251 | LOC_Os04g01310 |
| Inversion | Chr9 | 305622 | 305859 | LOC_Os09g01370 |
| Inversion | Chr10 | 472256 | 472398 | LOC_Os10g01720 |
| Inversion | Chr1 | 576141 | 576515 | 2 |
| Inversion | Chr8 | 657622 | 658207 | |
| Inversion | Chr3 | 726028 | 726217 | 2 |
| Inversion | Chr6 | 788535 | 789131 | |
| Inversion | Chr8 | 949498 | 949733 | LOC_Os08g02380 |
| Inversion | Chr8 | 949775 | 949983 | LOC_Os08g02380 |
| Inversion | Chr6 | 992927 | 993112 | LOC_Os06g02740 |
| Inversion | Chr3 | 1358531 | 1358886 | |
| Inversion | Chr1 | 1745688 | 1746014 | |
| Inversion | Chr9 | 1864003 | 1864160 | LOC_Os09g03690 |
| Inversion | Chr10 | 1897188 | 1897372 | |
| Inversion | Chr2 | 1949214 | 1949357 | LOC_Os02g04420 |
| Inversion | Chr8 | 2030824 | 2031251 | LOC_Os08g04180 |
| Inversion | Chr1 | 2222846 | 2223249 | |
| Inversion | Chr8 | 2305785 | 2306235 | 2 |
| Inversion | Chr2 | 2315414 | 2315569 | LOC_Os02g04945 |
| Inversion | Chr7 | 2392613 | 2392841 | |
| Inversion | Chr12 | 2401104 | 2401288 | |
| Inversion | Chr10 | 2412753 | 2413095 | 2 |
| Inversion | Chr5 | 2436706 | 2436909 | |
| Inversion | Chr6 | 2660324 | 2660691 | LOC_Os06g05820 |
| Inversion | Chr11 | 2725461 | 2725650 | |
| Inversion | Chr7 | 2832730 | 2832972 | |
| Inversion | Chr10 | 2842495 | 2842721 | |
| Inversion | Chr5 | 2917055 | 2917191 | LOC_Os05g05820 |
| Inversion | Chr1 | 2925289 | 2925402 | |
| Inversion | Chr9 | 3167894 | 3168140 | |
| Inversion | Chr3 | 3237039 | 3237242 | |
| Inversion | Chr3 | 3312704 | 3313000 | |
| Inversion | Chr10 | 3465811 | 3466124 | |
| Inversion | Chr11 | 3521310 | 3521567 | LOC_Os11g07060 |
| Inversion | Chr9 | 3594766 | 3595059 | LOC_Os09g07300 |
| Inversion | Chr5 | 3760881 | 3761160 | |
| Inversion | Chr12 | 3869357 | 3869579 | LOC_Os12g07700 |
| Inversion | Chr7 | 4031739 | 4031876 | |
| Inversion | Chr2 | 4077896 | 4078195 | LOC_Os02g07780 |
| Inversion | Chr11 | 4153126 | 4153657 | LOC_Os11g07980 |
| Inversion | Chr8 | 4711506 | 4711744 | LOC_Os08g08230 |
| Inversion | Chr3 | 5064031 | 5064346 | LOC_Os03g10050 |
| Inversion | Chr1 | 5344335 | 5344578 | |
| Inversion | Chr3 | 5452159 | 5452332 | |
| Inversion | Chr12 | 5514923 | 5515130 | LOC_Os12g10410 |
| Inversion | Chr8 | 5688396 | 5688683 | |
| Inversion | Chr2 | 6076469 | 6076671 | |
| Inversion | Chr3 | 6896466 | 6896566 | LOC_Os03g12820 |
| Inversion | Chr7 | 6911839 | 6911985 | |
| Inversion | Chr2 | 7127500 | 7127662 | LOC_Os02g13360 |
| Inversion | Chr6 | 7166993 | 7167146 | |
| Inversion | Chr9 | 7198118 | 7198561 | |
| Inversion | Chr2 | 7223678 | 7223868 | LOC_Os02g13510 |
| Inversion | Chr11 | 7317437 | 7317682 | |
| Inversion | Chr1 | 7344912 | 7345082 | LOC_Os01g13170 |
| Inversion | Chr6 | 7607047 | 7607311 | 2 |
| Inversion | Chr8 | 8318613 | 8318852 | |
| Inversion | Chr4 | 8594560 | 8594676 | |
| Inversion | Chr7 | 8875524 | 8875816 | LOC_Os07g15370 |
| Inversion | Chr9 | 9107865 | 9108122 | LOC_Os09g15060 |
| Inversion | Chr3 | 9849276 | 9849452 | LOC_Os03g17700 |
| Inversion | Chr3 | 9941784 | 9942139 | |
| Inversion | Chr11 | 10334471 | 10334680 | LOC_Os11g18320 |
| Inversion | Chr12 | 10772985 | 10773246 | LOC_Os12g18650 |
| Inversion | Chr9 | 10895635 | 10895888 | |
| Inversion | Chr7 | 10998936 | 10999084 | LOC_Os07g18610 |
| Inversion | Chr10 | 11122985 | 11123195 | |
| Inversion | Chr2 | 11589350 | 11589642 | |
| Inversion | Chr5 | 11653063 | 11653293 | LOC_Os05g19954 |
| Inversion | Chr4 | 11942479 | 11942688 | |
| Inversion | Chr7 | 12550156 | 12550379 | |
| Inversion | Chr3 | 12634011 | 12634151 | LOC_Os03g22050 |
| Inversion | Chr7 | 12690500 | 12690758 | LOC_Os07g22550 |
| Inversion | Chr10 | 12743323 | 12743554 | |
| Inversion | Chr6 | 12761613 | 12761898 | LOC_Os06g22030 |
| Inversion | Chr3 | 12989789 | 12990029 | LOC_Os03g22580 |
| Inversion | Chr3 | 13008491 | 13008891 | |
| Inversion | Chr10 | 13118929 | 13119192 | |
| Inversion | Chr3 | 13181881 | 13182174 | LOC_Os03g22810 |
| Inversion | Chr5 | 13260347 | 13260474 | |
| Inversion | Chr4 | 13620933 | 13621079 | LOC_Os04g23849 |
| Inversion | Chr10 | 13705443 | 13705869 | |
| Inversion | Chr8 | 14281876 | 14282404 | LOC_Os08g23590 |
| Inversion | Chr9 | 14465354 | 14465472 | LOC_Os09g24330 |
| Inversion | Chr7 | 14486039 | 14486257 | |
| Inversion | Chr3 | 14554872 | 14555011 | LOC_Os03g25480 |
| Inversion | Chr4 | 14718162 | 14718344 | |
| Inversion | Chr1 | 14738924 | 14739251 | |
| Inversion | Chr3 | 14923155 | 14923381 | LOC_Os03g26030 |
| Inversion | Chr3 | 15345821 | 15346157 | |
| Inversion | Chr3 | 15607293 | 15607488 | LOC_Os03g27230 |
| Inversion | Chr9 | 15799987 | 15800246 | LOC_Os09g26190 |
| Inversion | Chr9 | 16011626 | 16011749 | |
| Inversion | Chr3 | 16366566 | 16366864 | |
| Inversion | Chr6 | 16432149 | 16432331 | LOC_Os06g28820 |
| Inversion | Chr7 | 17003301 | 17003435 | LOC_Os07g28980 |
| Inversion | Chr2 | 17376768 | 17376976 | |
| Inversion | Chr7 | 17487000 | 17487255 | |
| Inversion | Chr8 | 17519388 | 17519491 | LOC_Os08g28690 |
| Inversion | Chr2 | 17784249 | 17784601 | LOC_Os02g29890 |
| Inversion | Chr1 | 17827707 | 17827944 | LOC_Os01g32510 |
| Inversion | Chr11 | 17857698 | 17857850 | |
| Inversion | Chr1 | 17945649 | 17945937 | LOC_Os01g32720 |
| Inversion | Chr12 | 18316918 | 18317216 | LOC_Os12g30520 |
| Inversion | Chr7 | 18471205 | 18471305 | |
| Inversion | Chr7 | 18625105 | 18625236 | |
| Inversion | Chr2 | 18778812 | 18779439 | LOC_Os02g31300 |
| Inversion | Chr1 | 18919050 | 18919332 | |
| Inversion | Chr4 | 18926352 | 18926540 | |
| Inversion | Chr4 | 19132404 | 19132611 | LOC_Os04g31940 |
| Inversion | Chr4 | 19252856 | 19253154 | |
| Inversion | Chr8 | 19423873 | 19424018 | |
| Inversion | Chr12 | 19431213 | 19431539 | LOC_Os12g32190 |
| Inversion | Chr12 | 19638141 | 19638381 | |
| Inversion | Chr9 | 19775541 | 19775874 | LOC_Os09g33530 |
| Inversion | Chr9 | 19911105 | 19911272 | LOC_Os09g33710 |
| Inversion | Chr8 | 19928389 | 19928586 | |
| Inversion | Chr11 | 19938123 | 19938363 | |
| Inversion | Chr5 | 19941892 | 19942185 | |
| Inversion | Chr11 | 19963662 | 19963952 | |
| Inversion | Chr11 | 20012770 | 20013039 | LOC_Os11g34180 |
| Inversion | Chr11 | 20079570 | 20080170 | |
| Inversion | Chr7 | 20115246 | 20115532 | LOC_Os07g33670 |
| Inversion | Chr5 | 20198652 | 20198941 | |
| Inversion | Chr9 | 20220132 | 20220644 | LOC_Os09g34240 |
| Inversion | Chr9 | 20232140 | 20232480 | LOC_Os09g34270 |
| Inversion | Chr5 | 20266405 | 20266620 | LOC_Os05g34230 |
| Inversion | Chr9 | 20273289 | 20273468 | LOC_Os09g34340 |
| Inversion | Chr8 | 20313210 | 20313523 | LOC_Os08g32780 |
| Inversion | Chr9 | 20335790 | 20336026 | |
| Inversion | Chr2 | 20484288 | 20484524 | |
| Inversion | Chr2 | 20733005 | 20733144 | |
| Inversion | Chr8 | 20831925 | 20832182 | |
| Inversion | Chr12 | 20834659 | 20834981 | LOC_Os12g34370 |
| Inversion | Chr7 | 20850899 | 20851062 | |
| Inversion | Chr9 | 20860308 | 20860575 | LOC_Os09g36180 |
| Inversion | Chr2 | 20906525 | 20906641 | LOC_Os02g34850 |
| Inversion | Chr4 | 20938907 | 20939396 | |
| Inversion | Chr9 | 20993357 | 20993474 | LOC_Os09g36370 |
| Inversion | Chr7 | 21319812 | 21320190 | LOC_Os07g35610 |
| Inversion | Chr7 | 21321078 | 21321394 | |
| Inversion | Chr3 | 21349841 | 21350227 | |
| Inversion | Chr2 | 21431129 | 21431331 | LOC_Os02g35630 |
| Inversion | Chr7 | 21466063 | 21466269 | LOC_Os07g35860 |
| Inversion | Chr2 | 21501034 | 21501172 | |
| Inversion | Chr10 | 21727974 | 21728200 | |
| Inversion | Chr6 | 21729003 | 21729157 | |
| Inversion | Chr7 | 21849343 | 21849524 | LOC_Os07g36544 |
| Inversion | Chr10 | 21852405 | 21852518 | |
| Inversion | Chr11 | 21981261 | 21981441 | |
| Inversion | Chr2 | 21987412 | 21987585 | LOC_Os02g36400 |
| Inversion | Chr6 | 22192041 | 22192302 | LOC_Os06g37500 |
| Inversion | Chr1 | 22337131 | 22337478 | 2 |
| Inversion | Chr7 | 22572498 | 22572805 | LOC_Os07g37650 |
| Inversion | Chr9 | 22793662 | 22793774 | LOC_Os09g39740 |
| Inversion | Chr1 | 22815655 | 22815841 | LOC_Os01g40410 |
| Inversion | Chr3 | 22935840 | 22936064 | LOC_Os03g41229 |
| Inversion | Chr8 | 22958094 | 22958391 | |
| Inversion | Chr1 | 23642698 | 23642819 | LOC_Os01g41770 |
| Inversion | Chr2 | 23837210 | 23837470 | |
| Inversion | Chr2 | 23985976 | 23986251 | |
| Inversion | Chr1 | 24052654 | 24052910 | LOC_Os01g42350 |
| Inversion | Chr2 | 24052835 | 24052941 | LOC_Os02g39800 |
| Inversion | Chr1 | 24057498 | 24057633 | |
| Inversion | Chr4 | 24139198 | 24139315 | |
| Inversion | Chr2 | 24162937 | 24163135 | LOC_Os02g39950 |
| Inversion | Chr11 | 24233974 | 24234279 | |
| Inversion | Chr5 | 24290576 | 24290987 | |
| Inversion | Chr6 | 24347425 | 24347574 | |
| Inversion | Chr6 | 24479130 | 24479310 | |
| Inversion | Chr12 | 24643043 | 24643336 | LOC_Os12g39870 |
| Inversion | Chr8 | 24686045 | 24686283 | LOC_Os08g39080 |
| Inversion | Chr7 | 24766207 | 24766471 | LOC_Os07g41340 |
| Inversion | Chr8 | 24774048 | 24774232 | LOC_Os08g39220 |
| Inversion | Chr5 | 25115423 | 25381174 | |
| Inversion | Chr5 | 25115430 | 25381196 | |
| Inversion | Chr4 | 25372150 | 25372450 | |
| Inversion | Chr12 | 25666600 | 25666844 | |
| Inversion | Chr8 | 25719344 | 25719510 | LOC_Os08g40630 |
| Inversion | Chr1 | 25878697 | 25878998 | |
| Inversion | Chr5 | 25928844 | 26904708 | 2 |
| Inversion | Chr5 | 25928854 | 26420203 | 2 |
| Inversion | Chr7 | 26039128 | 26039409 | LOC_Os07g43510 |
| Inversion | Chr6 | 26299986 | 26300323 | LOC_Os06g43680 |
| Inversion | Chr8 | 26391303 | 26391425 | LOC_Os08g41790 |
| Inversion | Chr6 | 26452846 | 26453020 | LOC_Os06g43910 |
| Inversion | Chr7 | 26636779 | 26637171 | LOC_Os07g44640 |
| Inversion | Chr2 | 26666706 | 26667025 | LOC_Os02g44111 |
| Inversion | Chr7 | 26782746 | 26783009 | 2 |
| Inversion | Chr1 | 26873783 | 26873892 | LOC_Os01g47050 |
| Inversion | Chr8 | 26987412 | 26987740 | |
| Inversion | Chr4 | 26988191 | 26988450 | 2 |
| Inversion | Chr6 | 27051963 | 27052230 | |
| Inversion | Chr11 | 27466348 | 27466617 | |
| Inversion | Chr3 | 27766110 | 27766383 | LOC_Os03g48710 |
| Inversion | Chr5 | 28130854 | 28131156 | LOC_Os05g49060 |
| Inversion | Chr1 | 28542003 | 28542267 | LOC_Os01g49670 |
| Inversion | Chr4 | 28865634 | 28865797 | LOC_Os04g48390 |
| Inversion | Chr11 | 28943190 | 28943341 | |
| Inversion | Chr5 | 28995729 | 28995938 | |
| Inversion | Chr3 | 29185730 | 29185862 | LOC_Os03g51050 |
| Inversion | Chr2 | 29450504 | 29450645 | LOC_Os02g48100 |
| Inversion | Chr5 | 29470426 | 29470953 | LOC_Os05g51390 |
| Inversion | Chr3 | 29520578 | 29520937 | 2 |
| Inversion | Chr6 | 29680675 | 29680859 | LOC_Os06g48990 |
| Inversion | Chr2 | 29738438 | 29738688 | LOC_Os02g48570 |
| Inversion | Chr2 | 29845587 | 29845813 | |
| Inversion | Chr2 | 30229175 | 30229347 | LOC_Os02g49460 |
| Inversion | Chr6 | 30329252 | 30329511 | |
| Inversion | Chr2 | 30371145 | 30371352 | |
| Inversion | Chr6 | 31130276 | 31130596 | LOC_Os06g51390 |
| Inversion | Chr6 | 31157219 | 31157354 | 2 |
| Inversion | Chr4 | 31642189 | 31642369 | LOC_Os04g53120 |
| Inversion | Chr3 | 31676338 | 31676875 | LOC_Os03g55620 |
| Inversion | Chr1 | 31681634 | 31681808 | LOC_Os01g55094 |
| Inversion | Chr2 | 31814227 | 31814777 | 2 |
| Inversion | Chr1 | 31848375 | 31848550 | |
| Inversion | Chr4 | 31997794 | 31997917 | LOC_Os04g53680 |
| Inversion | Chr4 | 32046605 | 32046919 | LOC_Os04g53770 |
| Inversion | Chr1 | 32621603 | 32621899 | LOC_Os01g56580 |
| Inversion | Chr4 | 32888491 | 32888615 | |
| Inversion | Chr4 | 33341597 | 33341720 | |
| Inversion | Chr1 | 33516275 | 33516430 | |
| Inversion | Chr4 | 33568028 | 33568339 | LOC_Os04g56300 |
| Inversion | Chr3 | 33737305 | 33737598 | 2 |
| Inversion | Chr3 | 33758259 | 33758601 | LOC_Os03g59290 |
| Inversion | Chr2 | 34045321 | 34045467 | LOC_Os02g55590 |
| Inversion | Chr2 | 34648542 | 34648682 | LOC_Os02g56560 |
| Inversion | Chr4 | 34713438 | 34713589 | |
| Inversion | Chr3 | 34881323 | 34881640 | |
| Inversion | Chr2 | 35075732 | 35075885 | LOC_Os02g57250 |
| Inversion | Chr3 | 35106524 | 35106781 | LOC_Os03g61930 |
| Inversion | Chr2 | 35248608 | 35249105 | |
| Inversion | Chr2 | 35280653 | 35280794 | LOC_Os02g57610 |
| Inversion | Chr2 | 35366266 | 35366598 | LOC_Os02g57750 |
| Inversion | Chr3 | 35474063 | 35474478 | 2 |
| Inversion | Chr1 | 36453044 | 36453313 | |
| Inversion | Chr1 | 37306676 | 37306861 | LOC_Os01g64250 |
| Inversion | Chr1 | 39247696 | 39248222 | |
| Inversion | Chr1 | 41017256 | 41017377 | |
| Inversion | Chr1 | 41384719 | 41384931 | LOC_Os01g71420 |
| Inversion | Chr1 | 43057074 | 43057356 | LOC_Os01g74310 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 6746005 | Chr5 | 26904704 | 2 |
| Translocation | Chr12 | 6746154 | Chr5 | 25928843 | 2 |
| Translocation | Chr3 | 11169112 | Chr2 | 34566126 | |
| Translocation | Chr11 | 16694121 | Chr7 | 9894221 |