Search Nipponbare

Mutant Information

Mutant Name	FN2094-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2094-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2211529	A-T	HET
SBS	Chr1	32381998	C-T	HET
SBS	Chr10	11755808	C-T	HET
SBS	Chr10	20531475	C-A	Homo
SBS	Chr10	8346402	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g16750
SBS	Chr11	21005867	G-A	HET
SBS	Chr11	4859984	C-A	HET
SBS	Chr11	8174652	C-T	HET
SBS	Chr12	17682045	T-A	Homo
SBS	Chr12	19126674	T-G	HET
SBS	Chr12	7313077	G-A	HET
SBS	Chr2	20282309	T-A	HET
SBS	Chr2	23737956	A-T	HET
SBS	Chr2	6592664	G-A	HET
SBS	Chr3	19428545	T-C	Homo
SBS	Chr4	13483964	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g23570
SBS	Chr4	14352955	C-T	Homo
SBS	Chr4	20327005	T-G	HET
SBS	Chr4	32523044	C-T	HET
SBS	Chr4	7745036	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g13880
SBS	Chr5	21729448	T-G	HET
SBS	Chr6	12830281	T-A	HET
SBS	Chr6	12971048	G-A	HET
SBS	Chr6	29471470	C-T	HET
SBS	Chr6	29916007	G-A	HET
SBS	Chr8	24523730	T-A	Homo
SBS	Chr9	9030642	G-A	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1878195	1878201	6	LOC_Os04g04070
Deletion	Chr6	4346763	4346767	4
Deletion	Chr9	4769915	4769917	2
Deletion	Chr5	5050459	5050469	10
Deletion	Chr4	6270564	6270573	9
Deletion	Chr10	8722453	8722477	24
Deletion	Chr1	10763377	10763378	1
Deletion	Chr3	11446214	11446215	1
Deletion	Chr4	13727601	13727605	4
Deletion	Chr7	16803548	16803553	5
Deletion	Chr2	19141982	19141983	1
Deletion	Chr5	20920001	20966000	45999	9
Deletion	Chr1	23306678	23306679	1
Deletion	Chr5	23749416	23749420	4
Deletion	Chr6	29567953	29567954	1
Deletion	Chr2	35329332	35329336	4	LOC_Os02g57690
Deletion	Chr1	37801967	37801974	7

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	21247509	21247511	3
Insertion	Chr3	21051953	21051953	1
Insertion	Chr5	13501127	13501127	1
Insertion	Chr6	27160547	27160548	2
Insertion	Chr8	17446884	17446884	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	574810	575228
Inversion	Chr2	2963742	2964044
Inversion	Chr3	12976655	12977057	LOC_Os03g22570
Inversion	Chr12	18193934	18194348
Inversion	Chr10	18248316	18248424
Inversion	Chr9	18449015	18449265
Inversion	Chr11	19877678	19878172

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	12290055	Chr3	34340975	2
Translocation	Chr8	14706911	Chr1	23827304	2
Translocation	Chr9	15054790	Chr8	20805569

Main menu