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Mutant Information

Mutant Name	FN2097-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2097-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype
SBS	Chr1	13416145	C-T	HET
SBS	Chr1	1582277	G-A	HET
SBS	Chr1	1812639	C-T	HET
SBS	Chr1	25287089	G-A	HET
SBS	Chr1	26332658	T-C	HET
SBS	Chr1	28712590	G-A	HET
SBS	Chr10	19875446	T-G	Homo
SBS	Chr10	6154357	C-G	HET
SBS	Chr11	26272734	T-A	Homo
SBS	Chr2	11484427	C-A	HET
SBS	Chr2	19968452	G-A	HET
SBS	Chr2	20218394	G-A	HET
SBS	Chr2	26819474	A-C	HET
SBS	Chr2	5911245	T-G	Homo
SBS	Chr2	6940433	T-C	Homo
SBS	Chr3	10330973	C-T	Homo
SBS	Chr3	11534744	G-A	Homo
SBS	Chr3	24737507	T-A	HET
SBS	Chr4	16888061	A-T	HET
SBS	Chr5	17435636	T-A	HET
SBS	Chr6	17779610	C-G	Homo
SBS	Chr6	25872870	C-T	HET
SBS	Chr6	6367296	G-A	HET
SBS	Chr7	15968900	C-T	HET
SBS	Chr8	25905744	A-T	HET
SBS	Chr9	3205042	G-A	Homo

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	40752	40753	1	LOC_Os02g01070
Deletion	Chr11	1221381	1221382	1
Deletion	Chr8	3566150	3566155	5
Deletion	Chr11	3598073	3598080	7
Deletion	Chr12	4751910	4751912	2
Deletion	Chr8	5192175	5192177	2
Deletion	Chr4	5643073	5643074	1
Deletion	Chr6	8654810	8654817	7
Deletion	Chr6	9091227	9091230	3
Deletion	Chr5	9275633	9275642	9
Deletion	Chr9	12124136	12124137	1
Deletion	Chr10	12466828	12466829	1
Deletion	Chr7	14500190	14500197	7
Deletion	Chr2	15439419	15439420	1
Deletion	Chr7	19714349	19714353	4	LOC_Os07g33000
Deletion	Chr8	20637657	20637658	1	LOC_Os08g33170
Deletion	Chr5	22401001	22411000	9999	4
Deletion	Chr5	23081753	23081761	8
Deletion	Chr1	23099175	23099179	4
Deletion	Chr10	23159407	23159408	1
Deletion	Chr8	23435697	23435698	1
Deletion	Chr5	26100588	26100595	7
Deletion	Chr6	27675676	27675680	4
Deletion	Chr3	28742720	28742722	2
Deletion	Chr3	31994199	31994209	10

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	27366270	27366271	2
Insertion	Chr12	17096932	17096932	1	LOC_Os12g28920
Insertion	Chr12	18865719	18865738	20
Insertion	Chr6	18659202	18659202	1
Insertion	Chr6	8619321	8619350	30	LOC_Os06g15210

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	21204602	21270962	2
Inversion	Chr3	21204609	21270957	2
Inversion	Chr5	21278501	21278695
Inversion	Chr8	22205373	22205853

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	6199577	Chr2	17852738
Translocation	Chr7	8049463	Chr5	14520344	2
Translocation	Chr7	15678772	Chr3	32048326	2
Translocation	Chr7	15678777	Chr3	32049973
Translocation	Chr2	24291650	Chr1	32236134	2

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