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Mutant Information

Mutant Name	FN2098-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2098-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15956078	C-T	HET
SBS	Chr1	21479974	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g38300
SBS	Chr1	24507887	A-G	Homo
SBS	Chr1	26090088	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g45920
SBS	Chr1	6119299	A-G	HET
SBS	Chr11	11053337	G-A	Homo
SBS	Chr11	2574292	A-T	HET
SBS	Chr11	4803679	C-T	Homo
SBS	Chr2	13813610	G-A	HET
SBS	Chr2	14385769	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g24790
SBS	Chr2	31039643	G-A	HET
SBS	Chr2	31677847	G-A	HET
SBS	Chr2	31677859	G-A	HET
SBS	Chr3	32216849	C-T	HET
SBS	Chr3	32744074	C-T	HET
SBS	Chr4	1155938	C-T	HET
SBS	Chr4	13203050	A-G	HET
SBS	Chr4	1546795	G-A	HET
SBS	Chr4	1546796	C-A	HET
SBS	Chr4	562663	T-A	HET
SBS	Chr5	17582513	T-C	HET
SBS	Chr5	5692936	G-A	HET
SBS	Chr5	6251813	C-T	HET
SBS	Chr6	19525082	C-T	Homo
SBS	Chr7	8318051	G-T	HET
SBS	Chr7	8318065	C-T	HET
SBS	Chr8	11918033	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g19890
SBS	Chr8	13635	A-G	HET
SBS	Chr8	3494131	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g06320
SBS	Chr9	11238578	A-T	HET
SBS	Chr9	16384575	C-G	HET
SBS	Chr9	22169466	G-A	HET

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	321876	321877	1	LOC_Os02g01570
Deletion	Chr8	1011125	1011126	1
Deletion	Chr12	2344468	2344470	2
Deletion	Chr9	4885178	4885186	8	LOC_Os09g09130
Deletion	Chr3	6720001	6780000	59999	8
Deletion	Chr3	6782001	6900000	117999	11
Deletion	Chr10	9725506	9725514	8
Deletion	Chr8	11363967	11363970	3	LOC_Os08g19040
Deletion	Chr7	14428494	14428496	2
Deletion	Chr12	14455206	14455223	17
Deletion	Chr6	21075526	21075542	16
Deletion	Chr9	21162891	21162892	1
Deletion	Chr1	21718010	21718013	3
Deletion	Chr7	23865726	23865741	15
Deletion	Chr11	25356937	25356940	3
Deletion	Chr8	26270869	26270872	3
Deletion	Chr6	28026198	28026210	12
Deletion	Chr7	29113450	29113451	1
Deletion	Chr1	29758674	29758682	8
Deletion	Chr1	31707769	31707771	2

No Insertion

Inversions: 10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	4527726	4528165	LOC_Os11g08569
Inversion	Chr1	9404181	9615512	2
Inversion	Chr9	10167664	10168247
Inversion	Chr1	10680887	10681096	LOC_Os01g18890
Inversion	Chr6	12675675	12676021
Inversion	Chr9	19552428	19552565
Inversion	Chr3	25590753	25590940
Inversion	Chr2	27883385	28486353	LOC_Os02g45770
Inversion	Chr2	27902077	28486359
Inversion	Chr1	42170285	42170412	LOC_Os01g72680

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	10379630	Chr1	2481428	LOC_Os06g17880
Translocation	Chr11	26982376	Chr6	23272799
Translocation	Chr2	27883394	Chr1	9615513	2

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