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Mutant Information

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	40427164	C-T	Homo
SBS	Chr1	41320465	T-A	Homo
SBS	Chr2	27358030	G-A	Homo
SBS	Chr2	27358031	G-T	Homo
SBS	Chr2	27358048	G-T	Homo
SBS	Chr2	35695842	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g58360
SBS	Chr3	1449810	C-G	HET
SBS	Chr3	10515348	G-A	HET
SBS	Chr3	10515349	G-A	HET
SBS	Chr3	12021924	C-T	HET
SBS	Chr3	15621097	T-A	Homo
SBS	Chr3	15621098	C-T	Homo
SBS	Chr3	15621099	T-G	Homo
SBS	Chr3	17960279	G-A	HET
SBS	Chr3	19837527	A-C	Homo
SBS	Chr3	23197331	G-A	HET	STOP_GAINED	LOC_Os03g41770
SBS	Chr3	35283737	G-A	HET
SBS	Chr3	35548945	G-A	HET
SBS	Chr4	7557454	T-A	Homo
SBS	Chr4	8253409	C-T	HET
SBS	Chr5	3676021	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g07000
SBS	Chr5	8849718	G-A	HET
SBS	Chr5	15322913	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g26340
SBS	Chr5	15363268	C-G	HET
SBS	Chr6	8778360	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15460
SBS	Chr6	8778361	G-T	HET
SBS	Chr7	4424618	G-T	HET
SBS	Chr7	17955361	A-G	HET
SBS	Chr8	1172123	A-G	HET
SBS	Chr8	9515721	C-A	HET
SBS	Chr8	10864980	A-C	HET
SBS	Chr8	10864981	C-G	HET
SBS	Chr8	18778790	G-A	HET
SBS	Chr8	23079824	A-G	HET
SBS	Chr9	3418634	A-C	HET
SBS	Chr9	11454353	T-C	HET
SBS	Chr9	16673813	T-C	Homo
SBS	Chr9	21649091	G-A	HET
SBS	Chr10	4770009	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g08820
SBS	Chr10	15139057	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g29050
SBS	Chr12	16851019	C-T	HET
SBS	Chr12	24485218	T-C	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	77180	77182	2
Deletion	Chr7	4216854	4216858	4
Deletion	Chr2	4463675	4463677	2
Deletion	Chr6	4721746	4721764	18
Deletion	Chr11	6132944	6133414	470
Deletion	Chr4	7495718	7496067	349
Deletion	Chr11	7550746	7550747	1
Deletion	Chr2	13702392	13702557	165
Deletion	Chr2	13702837	13702992	155
Deletion	Chr2	15217157	15217158	1	LOC_Os02g25930
Deletion	Chr6	15482496	15482960	464
Deletion	Chr2	18431061	18431062	1
Deletion	Chr6	19710245	19710247	2
Deletion	Chr7	24085687	24085689	2
Deletion	Chr2	30944039	30944040	1	LOC_Os02g50660

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	24662442	24662445	4
Insertion	Chr6	9908046	9908047	2
Insertion	Chr10	287168	287169	2
Insertion	Chr2	16496952	16496952	1
Insertion	Chr3	14987577	14987577	1
Insertion	Chr3	24566392	24566392	1
Insertion	Chr5	29906816	29906817	2
Insertion	Chr8	9136215	9136216	2
Insertion	Chr9	6699620	6699650	31
Insertion	Chr9	7057797	7057798	2
Insertion	Chr11	20495066	20495067	2
Insertion	Chr12	5628494	5628494	1

Inversions: 15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	685277	685550	2
Inversion	Chr6	6707703	6707911
Inversion	Chr6	6707709	6707859
Inversion	Chr12	8540895	8541355	LOC_Os12g14930
Inversion	Chr6	9632595	9632866
Inversion	Chr1	11247626	12037466	2
Inversion	Chr6	14092465	14092811
Inversion	Chr10	19129905	19862020	LOC_Os10g35770
Inversion	Chr10	19129913	19862038	LOC_Os10g35770
Inversion	Chr12	20559254	20559511
Inversion	Chr12	20559259	20559445
Inversion	Chr12	20559316	20559471
Inversion	Chr8	24927354	24927461
Inversion	Chr4	29096434	29096843
Inversion	Chr1	39127550	39127878

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	3954889	Chr3	1385048	2
Translocation	Chr9	4699954	Chr7	27254265
Translocation	Chr11	7181431	Chr1	32519417	2
Translocation	Chr4	7545633	Chr1	32129091	LOC_Os04g13530
Translocation	Chr11	8406021	Chr7	10616299
Translocation	Chr11	10924574	Chr9	7407204
Translocation	Chr12	13510871	Chr7	1293651
Translocation	Chr12	16084927	Chr9	11363237
Translocation	Chr12	18690359	Chr5	6215295
Translocation	Chr11	21138906	Chr7	13468624	LOC_Os11g35970
Translocation	Chr12	24680799	Chr9	18280007
Translocation	Chr3	29627043	Chr1	2484851	LOC_Os03g51710
Translocation	Chr4	32040721	Chr3	31809571

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