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Mutant Information

Mutant Name	FN2106-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2106-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1047270	C-T	HET
SBS	Chr1	21782304	G-A	HET
SBS	Chr1	37390102	A-G	HET
SBS	Chr1	4548549	A-G	HET
SBS	Chr10	2747133	T-C	Homo
SBS	Chr11	21581486	A-G	HET
SBS	Chr11	4793867	G-A	Homo
SBS	Chr12	8885023	C-G	HET
SBS	Chr2	13619201	T-C	HET
SBS	Chr2	20361523	G-A	HET
SBS	Chr2	28467017	G-T	HET
SBS	Chr2	3503116	G-A	Homo
SBS	Chr3	12169676	T-A	Homo
SBS	Chr3	21249331	G-A	Homo
SBS	Chr3	23205572	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g41780
SBS	Chr3	27727982	A-T	HET
SBS	Chr3	27859243	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g48930
SBS	Chr4	17418942	C-T	HET
SBS	Chr4	19543757	A-G	Homo
SBS	Chr4	29928447	T-A	Homo
SBS	Chr4	5251262	A-G	HET
SBS	Chr5	12374000	C-T	HET
SBS	Chr5	18699038	A-G	HET
SBS	Chr5	22507688	C-T	HET
SBS	Chr5	23045177	T-G	HET
SBS	Chr5	24080921	A-T	HET
SBS	Chr6	7804984	C-A	HET
SBS	Chr6	9683594	T-A	HET
SBS	Chr7	3602334	A-G	Homo
SBS	Chr8	15307845	G-A	HET
SBS	Chr8	8677058	C-T	HET
SBS	Chr9	13384798	C-T	Homo
SBS	Chr9	15726055	A-G	Homo
SBS	Chr9	16406932	G-A	HET
SBS	Chr9	20513906	A-T	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2022001	2119000	96999	18
Deletion	Chr1	4268646	4268649	3
Deletion	Chr6	7674077	7674291	214	LOC_Os06g13830
Deletion	Chr8	9522891	9522893	2	LOC_Os08g15680
Deletion	Chr10	9789834	9789956	122
Deletion	Chr7	10382677	10382682	5	LOC_Os07g17580
Deletion	Chr8	20272017	20272029	12
Deletion	Chr5	21370957	21370958	1
Deletion	Chr11	24311165	24311173	8
Deletion	Chr12	24621481	24621482	1	LOC_Os12g39830
Deletion	Chr5	24962339	24962342	3
Deletion	Chr3	32519218	32519219	1
Deletion	Chr1	33986494	33986495	1

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	6477024	6477025	2
Insertion	Chr10	6753233	6753265	33	LOC_Os10g12140
Insertion	Chr11	22527025	22527027	3
Insertion	Chr12	17076152	17076152	1
Insertion	Chr3	22475639	22475639	1
Insertion	Chr3	28982499	28982500	2
Insertion	Chr5	16384705	16384728	24
Insertion	Chr7	11926154	11926154	1
Insertion	Chr7	15093711	15093712	2
Insertion	Chr8	3495549	3495552	4

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr2	4053144	4053250
Inversion	Chr12	21050985	21051242
Inversion	Chr3	29983107	29983464

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	6694118	Chr1	43253522	LOC_Os03g12600
Translocation	Chr11	13519944	Chr5	7847852
Translocation	Chr11	19155590	Chr1	19823238

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