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Mutant Information

Mutant Name	FN2108-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2108-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	786487	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g02430
SBS	Chr1	786488	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g02430
SBS	Chr1	24954180	C-G	HET
SBS	Chr1	31874949	A-T	HET
SBS	Chr2	11717785	G-A	Homo
SBS	Chr3	7286017	A-G	HET
SBS	Chr3	13905602	G-A	HET
SBS	Chr4	17224984	C-T	Homo
SBS	Chr4	20202496	A-T	HET
SBS	Chr4	25406787	C-T	HET
SBS	Chr4	25536255	G-A	HET
SBS	Chr4	28614424	C-T	HET
SBS	Chr4	34387657	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g57730
SBS	Chr4	35353020	A-T	HET
SBS	Chr5	15495404	G-A	Homo
SBS	Chr5	28427660	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g49560
SBS	Chr6	8615563	T-G	HET
SBS	Chr6	17101193	G-T	HET
SBS	Chr7	4661721	T-G	HET
SBS	Chr8	8387188	C-T	HET
SBS	Chr8	26979753	G-C	Homo
SBS	Chr9	18137068	C-T	HET
SBS	Chr9	19521834	G-C	HET
SBS	Chr10	5582069	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g10170
SBS	Chr10	6759426	C-T	Homo
SBS	Chr10	7009997	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g12590
SBS	Chr11	10930630	A-G	Homo
SBS	Chr11	13316016	G-C	Homo
SBS	Chr11	26759493	G-C	HET
SBS	Chr11	26926764	G-A	HET
SBS	Chr12	24211076	T-C	HET
SBS	Chr12	24907714	C-G	HET

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	518491	518492	1
Deletion	Chr12	3591032	3591033	1
Deletion	Chr10	6089050	6089054	4
Deletion	Chr1	6783824	6783825	1	LOC_Os01g12410
Deletion	Chr6	12345001	12418000	72999	10
Deletion	Chr6	12423001	12499000	75999	14
Deletion	Chr6	12537001	12701000	163999	27
Deletion	Chr7	14289044	14289046	2
Deletion	Chr8	15901215	15901219	4
Deletion	Chr7	22181891	22181892	1
Deletion	Chr12	22918557	22918558	1
Deletion	Chr1	23862903	23863398	495
Deletion	Chr4	24713489	24713490	1	LOC_Os04g41690
Deletion	Chr4	26837535	26837537	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	15761937	15761938	2
Insertion	Chr2	26635826	26635826	1
Insertion	Chr4	32450477	32450543	67
Insertion	Chr7	13579336	13579336	1
Insertion	Chr7	18301570	18301570	1
Insertion	Chr10	6049225	6049226	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1973547	1974019	LOC_Os02g04460

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	10309973	Chr10	18001852	2
Translocation	Chr2	11548165	Chr1	22081733	LOC_Os02g19730
Translocation	Chr9	12489821	Chr4	17872086
Translocation	Chr11	17800770	Chr3	24328170	2
Translocation	Chr9	21450149	Chr7	1729732

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