Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN2110-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2110-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13459162 | G-A | Homo | ||
| SBS | Chr1 | 40174251 | C-A | Homo | ||
| SBS | Chr10 | 18857508 | T-C | Homo | ||
| SBS | Chr10 | 5451362 | C-T | Homo | ||
| SBS | Chr11 | 13016509 | T-C | HET | ||
| SBS | Chr11 | 464424 | A-C | HET | ||
| SBS | Chr12 | 13027978 | G-T | HET | ||
| SBS | Chr2 | 19584894 | G-A | HET | ||
| SBS | Chr3 | 22366843 | G-A | HET | ||
| SBS | Chr3 | 29094410 | C-T | HET | ||
| SBS | Chr3 | 7580836 | T-A | HET | ||
| SBS | Chr4 | 17498023 | A-T | Homo | ||
| SBS | Chr4 | 34760676 | C-A | HET | ||
| SBS | Chr4 | 34760677 | A-T | HET | ||
| SBS | Chr4 | 6079375 | G-A | Homo | ||
| SBS | Chr5 | 24619745 | T-A | HET | ||
| SBS | Chr5 | 27283923 | C-T | Homo | ||
| SBS | Chr5 | 3891798 | A-G | HET | ||
| SBS | Chr7 | 10560103 | G-A | HET | ||
| SBS | Chr7 | 10682045 | A-T | Homo | ||
| SBS | Chr8 | 26738753 | G-A | HET | ||
| SBS | Chr8 | 27363949 | A-T | HET | ||
| SBS | Chr9 | 14599879 | G-A | HET | ||
| SBS | Chr9 | 17655579 | T-C | HET |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 498694 | 498702 | 8 | LOC_Os11g01920 |
| Deletion | Chr4 | 2673635 | 2673636 | 1 | |
| Deletion | Chr5 | 4089215 | 4089216 | 1 | |
| Deletion | Chr7 | 8568886 | 8568888 | 2 | |
| Deletion | Chr9 | 9241548 | 9241550 | 2 | |
| Deletion | Chr8 | 10908546 | 10908547 | 1 | |
| Deletion | Chr6 | 13267287 | 13267288 | 1 | |
| Deletion | Chr4 | 17183001 | 17190000 | 6999 | 3 |
| Deletion | Chr1 | 17294667 | 17294668 | 1 | |
| Deletion | Chr10 | 18945449 | 18945450 | 1 | |
| Deletion | Chr5 | 19519178 | 19519182 | 4 | |
| Deletion | Chr11 | 20465307 | 20465313 | 6 | |
| Deletion | Chr6 | 20907260 | 20907267 | 7 | |
| Deletion | Chr11 | 20990466 | 20990467 | 1 | LOC_Os11g35756 |
| Deletion | Chr5 | 23010124 | 23010125 | 1 | LOC_Os05g39240 |
| Deletion | Chr1 | 23330869 | 23330874 | 5 | LOC_Os01g41210 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 23663207 | 23663207 | 1 | |
| Insertion | Chr12 | 21046231 | 21046231 | 1 | |
| Insertion | Chr3 | 21470815 | 21470815 | 1 | |
| Insertion | Chr7 | 28947975 | 28947982 | 8 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 3629043 | 3629433 | |
| Inversion | Chr5 | 3847913 | 3848118 | |
| Inversion | Chr2 | 4694687 | 4728930 | LOC_Os02g09150 |
| Inversion | Chr2 | 4694691 | 4728934 | LOC_Os02g09150 |
| Inversion | Chr4 | 17115466 | 17182790 | 2 |
| Inversion | Chr4 | 17115471 | 17190675 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 5819037 | Chr2 | 2772524 | 2 |
| Translocation | Chr5 | 7360981 | Chr1 | 31164154 | 2 |
| Translocation | Chr11 | 9428915 | Chr4 | 696421 | LOC_Os11g17014 |
| Translocation | Chr8 | 9803838 | Chr6 | 9802277 | |
| Translocation | Chr7 | 10124161 | Chr4 | 10495483 | |
| Translocation | Chr12 | 16204352 | Chr4 | 3633936 |