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Mutant Information

Mutant Name	FN2112-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2112-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15931499	G-A	HET
SBS	Chr1	20466268	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g36790
SBS	Chr1	22013508	C-T	HET
SBS	Chr1	31302609	C-T	HET
SBS	Chr1	33019790	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g57120
SBS	Chr2	2800562	T-C	HET
SBS	Chr2	14336286	A-T	Homo
SBS	Chr2	14336287	C-T	Homo
SBS	Chr2	33491056	A-G	Homo
SBS	Chr3	23529157	G-A	HET
SBS	Chr3	23531740	T-C	HET
SBS	Chr3	29909958	G-A	Homo
SBS	Chr3	30062699	T-A	HET
SBS	Chr4	11568724	C-T	HET
SBS	Chr4	23367229	A-G	HET
SBS	Chr4	31558423	T-A	HET
SBS	Chr5	6957631	T-A	HET
SBS	Chr5	10288978	G-A	HET
SBS	Chr5	25964129	G-C	HET
SBS	Chr5	29409146	C-T	HET
SBS	Chr6	15566100	G-A	HET
SBS	Chr6	31113752	G-A	HET
SBS	Chr7	23114477	C-T	HET
SBS	Chr7	25482312	A-T	HET
SBS	Chr7	26565346	A-T	HET
SBS	Chr8	2583276	A-C	HET
SBS	Chr8	15436737	G-A	HET
SBS	Chr9	391139	T-C	Homo
SBS	Chr9	12588928	C-G	Homo
SBS	Chr10	8377240	C-G	HET
SBS	Chr10	10240124	T-C	HET
SBS	Chr12	7564157	G-A	Homo
SBS	Chr12	9640055	G-T	HET
SBS	Chr12	13675412	A-T	HET
SBS	Chr12	17256906	C-T	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1878664	1878666	2
Deletion	Chr5	2617882	2617888	6
Deletion	Chr12	7559256	7559262	6
Deletion	Chr12	9857001	9890000	32999	7
Deletion	Chr10	11369061	11369062	1	LOC_Os10g22010
Deletion	Chr12	12930001	12952000	21999	4
Deletion	Chr9	13114550	13114558	8
Deletion	Chr11	23182982	23182983	1
Deletion	Chr4	23202785	23202790	5
Deletion	Chr8	24682454	24682458	4
Deletion	Chr11	25437918	25437968	50
Deletion	Chr3	31099351	31099352	1
Deletion	Chr1	36692001	36709000	16999	4

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	12569228	12569233	6
Insertion	Chr8	850070	850099	30
Insertion	Chr10	1435246	1435246	1
Insertion	Chr11	12115899	12115951	53

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	88293	88393	2
Inversion	Chr11	779604	779889
Inversion	Chr12	9861111	10669988	2
Inversion	Chr12	9885731	10669995	2
Inversion	Chr3	16866802	17221785	2
Inversion	Chr3	16866806	17221818	2

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	5103053	Chr9	21492592	2
Translocation	Chr12	8457430	Chr4	17650979	2
Translocation	Chr12	8457437	Chr4	17647995	2
Translocation	Chr7	13144941	Chr2	3670373	2
Translocation	Chr7	13145243	Chr2	3670370	2
Translocation	Chr4	14904815	Chr1	10015493
Translocation	Chr5	20329613	Chr1	24433882	2
Translocation	Chr5	20330507	Chr1	24433884	2
Translocation	Chr12	21554988	Chr9	20686566	LOC_Os12g35450

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