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Mutant Information

Mutant Name	FN2114-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2114-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	273850	A-T	Homo
SBS	Chr1	803727	A-G	HET
SBS	Chr1	4839457	A-G	HET
SBS	Chr1	21442377	G-A	Homo
SBS	Chr1	23141598	C-T	Homo
SBS	Chr1	31276411	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g54350
SBS	Chr1	42556238	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g73430
SBS	Chr2	10258044	G-A	HET
SBS	Chr2	29983278	G-T	Homo
SBS	Chr2	32025170	A-T	Homo
SBS	Chr3	11153328	C-A	Homo
SBS	Chr3	13177607	A-C	Homo
SBS	Chr3	27769950	A-C	Homo
SBS	Chr3	30564373	T-A	HET
SBS	Chr4	9896132	G-A	HET
SBS	Chr4	12477428	A-T	HET
SBS	Chr4	18296275	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g30630
SBS	Chr4	24431197	G-T	HET
SBS	Chr4	26960697	T-A	HET
SBS	Chr4	30436745	G-T	Homo
SBS	Chr5	29257999	T-C	HET
SBS	Chr6	7508325	G-A	HET
SBS	Chr6	11632183	C-A	Homo
SBS	Chr7	11085123	G-T	HET
SBS	Chr7	16802720	A-G	HET
SBS	Chr7	18608522	C-T	Homo
SBS	Chr8	2392830	A-G	HET
SBS	Chr8	6339203	A-T	Homo
SBS	Chr8	9902398	C-T	HET
SBS	Chr8	13155914	T-A	Homo
SBS	Chr8	24681070	G-A	HET
SBS	Chr10	1084063	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g02750
SBS	Chr10	1103037	G-T	HET
SBS	Chr11	8495781	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g15090
SBS	Chr11	9602651	G-A	HET	STOP_GAINED	LOC_Os11g17230
SBS	Chr12	13128543	A-G	HET

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	248601	248602	1
Deletion	Chr8	5863132	5863133	1
Deletion	Chr4	9789543	9789707	164
Deletion	Chr1	10632055	10632057	2
Deletion	Chr10	13188001	13212000	23999	4
Deletion	Chr10	13214001	13284000	69999	11
Deletion	Chr8	19393151	19393152	1
Deletion	Chr3	19648163	19648164	1	LOC_Os03g35440
Deletion	Chr6	21368186	21368188	2
Deletion	Chr2	22191428	22191432	4
Deletion	Chr4	31777458	31777466	8

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	7439542	7439543	2
Insertion	Chr3	20505259	20505259	1
Insertion	Chr6	2545992	2545993	2
Insertion	Chr4	9331355	9331355	1
Insertion	Chr5	9275433	9275435	3
Insertion	Chr10	14078725	14078732	8

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	11238516	11238974
Inversion	Chr8	16345941	16346301
Inversion	Chr10	16991589	16991794	LOC_Os10g32405
Inversion	Chr12	24118323	24118901

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2944926	Chr1	24808224
Translocation	Chr3	4986082	Chr1	3152803	LOC_Os03g09970
Translocation	Chr8	18415586	Chr2	10934385	2
Translocation	Chr12	18707857	Chr5	12102750	2
Translocation	Chr11	19300753	Chr4	23931058
Translocation	Chr6	22464759	Chr3	25032538
Translocation	Chr11	27545553	Chr9	9599732
Translocation	Chr11	28290004	Chr9	2321440	2

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