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Mutant Information

Mutant Name	FN2115-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2115-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype
SBS	Chr1	16732472	T-A	Homo
SBS	Chr10	1497450	C-G	HET
SBS	Chr11	23285902	C-T	HET
SBS	Chr11	25069960	G-T	Homo
SBS	Chr11	9007586	A-G	Homo
SBS	Chr12	24535847	G-A	HET
SBS	Chr12	696493	T-G	HET
SBS	Chr2	10773599	T-A	Homo
SBS	Chr2	19934262	T-G	HET
SBS	Chr2	31418367	G-A	Homo
SBS	Chr3	21633685	G-A	HET
SBS	Chr3	30634703	A-T	HET
SBS	Chr3	34209328	A-G	HET
SBS	Chr3	35239015	C-T	HET
SBS	Chr4	12894022	A-G	Homo
SBS	Chr5	6202478	A-T	HET
SBS	Chr6	29769119	G-A	Homo
SBS	Chr6	8345437	A-G	HET
SBS	Chr7	10483236	G-A	Homo
SBS	Chr8	10720840	G-A	HET
SBS	Chr8	25915231	C-T	Homo
SBS	Chr9	8466946	G-C	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1723631	1723647	16
Deletion	Chr4	2888474	2888476	2
Deletion	Chr4	3620457	3620467	10
Deletion	Chr9	3637925	3637930	5
Deletion	Chr3	4444097	4444102	5
Deletion	Chr2	4850769	4850770	1	LOC_Os02g09450
Deletion	Chr7	6175157	6175166	9
Deletion	Chr8	7394882	7394890	8
Deletion	Chr9	9084649	9084651	2
Deletion	Chr9	13344282	13344284	2	LOC_Os09g22030
Deletion	Chr6	13804041	13804062	21	LOC_Os06g23650
Deletion	Chr5	23156001	23222000	65999	8
Deletion	Chr2	23600739	23600740	1
Deletion	Chr6	24758493	24758499	6	LOC_Os06g41340
Deletion	Chr12	25839139	25839148	9	LOC_Os12g41720
Deletion	Chr4	27258478	27258485	7

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	24953426	24953488	63
Insertion	Chr11	25044113	25044116	4
Insertion	Chr2	4779931	4779931	1	LOC_Os02g09280
Insertion	Chr3	35105050	35105050	1
Insertion	Chr7	7927044	7927044	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	13040874	13299390	2
Inversion	Chr4	29205505	29323606
Inversion	Chr4	29205519	29323615

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	20964296	Chr7	13236593	2

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