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Mutant Information

Mutant Name	FN2117-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2117-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4030593	G-T	HET
SBS	Chr1	13193155	C-G	HET
SBS	Chr1	23660389	T-A	HET
SBS	Chr1	23660390	T-A	HET
SBS	Chr2	19066618	G-C	Homo
SBS	Chr2	22753325	A-G	HET
SBS	Chr2	29845597	C-T	HET
SBS	Chr4	10072840	A-G	HET
SBS	Chr4	18271736	T-C	Homo
SBS	Chr4	35054121	C-T	HET
SBS	Chr5	29916623	G-A	HET
SBS	Chr6	13719329	C-A	HET
SBS	Chr7	7221947	G-C	HET
SBS	Chr7	21810390	G-A	HET
SBS	Chr7	21858432	A-G	HET
SBS	Chr8	7375613	T-C	Homo
SBS	Chr9	19882315	T-C	HET
SBS	Chr10	394135	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g01600
SBS	Chr10	634025	A-G	HET
SBS	Chr10	2697057	C-T	HET
SBS	Chr10	19798470	G-A	HET
SBS	Chr12	20120143	C-T	HET
SBS	Chr12	23814324	C-A	Homo

Deletions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Deletion	Chr2	17801431	17801432	1
Deletion	Chr7	21272633	21272634	1
Deletion	Chr7	22358419	22358420	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	18371588	18371589	2
Insertion	Chr1	11795605	11795606	2
Insertion	Chr2	14476615	14476615	1
Insertion	Chr4	14418717	14418717	1
Insertion	Chr7	22608285	22608287	3	LOC_Os07g37710
Insertion	Chr9	8299252	8299252	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	2371376	2371854
Inversion	Chr1	4080348	4080650
Inversion	Chr2	16256496	16257231
Inversion	Chr12	16363802	16363907
Inversion	Chr10	19896620	19896763	LOC_Os10g37180
Inversion	Chr4	26533236	26533398	LOC_Os04g44820

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	7623502	Chr3	25863245
Translocation	Chr12	8841597	Chr6	11605812
Translocation	Chr8	10124260	Chr6	15690600	LOC_Os08g16540
Translocation	Chr8	19390445	Chr3	19732398	LOC_Os08g31350
Translocation	Chr11	23031366	Chr7	2896031	2
Translocation	Chr11	28200562	Chr1	27439723	2

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