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Mutant Information

Mutant Name	FN2121-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2121-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Very Low (below 24% compare to WT) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Very Low (Below 24%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 49

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5792475	T-A	Homo
SBS	Chr1	10502532	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g18650
SBS	Chr1	21079068	C-A	HET
SBS	Chr1	42352610	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g73000
SBS	Chr2	5909342	G-A	HET
SBS	Chr2	5909357	G-A	HET
SBS	Chr2	10617941	C-T	HET
SBS	Chr3	5812522	G-A	HET
SBS	Chr3	8847488	C-T	HET
SBS	Chr3	13402991	A-G	HET
SBS	Chr3	22843833	C-A	HET
SBS	Chr3	33122697	C-T	Homo
SBS	Chr4	17482200	G-A	HET
SBS	Chr4	18047482	C-T	HET
SBS	Chr4	19285278	A-G	HET
SBS	Chr4	26663627	G-T	HET
SBS	Chr4	29488624	T-C	HET
SBS	Chr4	29488800	T-C	HET
SBS	Chr5	8770012	G-T	Homo
SBS	Chr5	8770013	C-T	Homo
SBS	Chr5	10184395	G-T	Homo
SBS	Chr5	10822522	C-T	Homo
SBS	Chr5	16326697	G-A	Homo
SBS	Chr5	26956318	A-G	HET
SBS	Chr6	947961	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g02660
SBS	Chr6	1476121	C-T	HET
SBS	Chr6	2880911	G-A	HET
SBS	Chr6	14756362	G-A	HET
SBS	Chr7	10608673	C-T	Homo
SBS	Chr7	16400162	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g28120
SBS	Chr7	28914225	C-T	Homo
SBS	Chr8	21113256	G-C	HET
SBS	Chr8	21127963	A-T	HET
SBS	Chr9	1320921	G-A	HET
SBS	Chr9	3711853	C-T	HET
SBS	Chr9	4078919	T-A	HET
SBS	Chr9	8388726	C-G	HET
SBS	Chr9	22836044	C-T	HET
SBS	Chr10	761606	G-T	HET
SBS	Chr10	8468958	C-G	HET
SBS	Chr10	9271837	C-A	HET
SBS	Chr11	4328980	G-A	Homo
SBS	Chr11	4458218	C-A	Homo
SBS	Chr11	8804611	A-G	Homo
SBS	Chr11	16923297	C-T	HET
SBS	Chr12	8342307	G-A	HET
SBS	Chr12	9130653	G-A	HET
SBS	Chr12	10844427	G-A	HET
SBS	Chr12	15472018	A-T	HET

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	178917	178918	1
Deletion	Chr11	3363905	3363906	1	LOC_Os11g06850
Deletion	Chr9	4256922	4256926	4
Deletion	Chr12	5280592	5280593	1
Deletion	Chr11	5490035	5490036	1
Deletion	Chr10	6256681	6256682	1
Deletion	Chr1	11984394	11984395	1
Deletion	Chr4	22849659	22849660	1
Deletion	Chr7	24052562	24052570	8
Deletion	Chr3	24174687	24174689	2
Deletion	Chr3	27535656	27535657	1
Deletion	Chr4	28947442	28947443	1
Deletion	Chr4	29367001	29383000	15999	LOC_Os04g49230
Deletion	Chr1	33667201	33667209	8

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	11271277	11271278	2
Insertion	Chr11	18455918	18455918	1
Insertion	Chr1	24738973	24738984	12
Insertion	Chr6	7300350	7300389	40	LOC_Os06g13270
Insertion	Chr10	13213002	13213002	1
Insertion	Chr12	6820765	6820831	67

Inversions: 15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	6254046	6254204	LOC_Os10g11270
Inversion	Chr7	9518799	9518917
Inversion	Chr6	10429487	10429846
Inversion	Chr8	10577538	10577810	LOC_Os08g17294
Inversion	Chr10	17024044	17024177
Inversion	Chr8	19365993	19366425
Inversion	Chr11	20028099	20028394	LOC_Os11g34200
Inversion	Chr5	21123571	21339228	2
Inversion	Chr6	21953788	21953946	LOC_Os06g37150
Inversion	Chr8	22448811	22449407	LOC_Os08g35620
Inversion	Chr8	24755143	24755533	LOC_Os08g39174
Inversion	Chr12	24946082	24946368	LOC_Os12g40279
Inversion	Chr4	26719789	26719980
Inversion	Chr5	27673211	27673503
Inversion	Chr7	29617675	29617805	LOC_Os07g49460

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	7731507	Chr5	4615629	LOC_Os08g13014
Translocation	Chr4	13273214	Chr2	30836587
Translocation	Chr5	21339223	Chr4	14181534	2

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