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Mutant Information

Mutant Name	FN2122-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2122-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14634354	T-C	Homo
SBS	Chr1	1905427	C-A	HET
SBS	Chr1	32934485	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g57004
SBS	Chr1	40505036	C-A	HET
SBS	Chr10	22225039	T-C	HET
SBS	Chr10	7283514	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g13480
SBS	Chr11	21436071	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g36380
SBS	Chr11	7515183	G-A	Homo
SBS	Chr11	8796402	G-T	Homo
SBS	Chr11	8796403	G-T	Homo
SBS	Chr12	12180926	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g21680
SBS	Chr12	12248967	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g21770
SBS	Chr12	4011765	C-T	HET
SBS	Chr2	31961111	G-A	HET
SBS	Chr2	8839659	C-T	HET
SBS	Chr3	17337623	G-A	HET
SBS	Chr3	19411728	A-T	HET
SBS	Chr3	22478851	G-A	HET
SBS	Chr4	11218635	G-T	HET
SBS	Chr4	11787023	G-T	Homo
SBS	Chr4	17674414	G-T	HET
SBS	Chr4	17674415	G-T	HET
SBS	Chr4	19107504	C-T	HET
SBS	Chr4	29026301	G-T	Homo
SBS	Chr4	29998927	C-T	Homo
SBS	Chr5	14881394	T-G	Homo
SBS	Chr5	3149560	T-G	Homo
SBS	Chr6	29848564	G-A	Homo
SBS	Chr6	8700362	G-T	HET
SBS	Chr7	844457	G-C	HET
SBS	Chr8	14317904	G-A	HET
SBS	Chr9	22551727	G-A	HET
SBS	Chr9	9383424	C-T	Homo

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	3030735	3030742	7	LOC_Os11g06320
Deletion	Chr11	5148878	5148882	4
Deletion	Chr12	5253131	5253136	5
Deletion	Chr9	8048177	8048178	1
Deletion	Chr5	8115307	8115308	1	LOC_Os05g14400
Deletion	Chr11	8171348	8171351	3
Deletion	Chr5	8185683	8185684	1
Deletion	Chr11	8524919	8524923	4
Deletion	Chr10	9332673	9332675	2
Deletion	Chr8	10747831	10747940	109
Deletion	Chr10	13080787	13080794	7
Deletion	Chr9	13488195	13488200	5	LOC_Os09g22320
Deletion	Chr1	16895476	16895487	11
Deletion	Chr3	20954102	20954104	2
Deletion	Chr5	22795066	22795067	1
Deletion	Chr2	31187972	31187974	2
Deletion	Chr4	32989011	32989013	2
Deletion	Chr1	42179185	42179186	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	9013314	9013314	1
Insertion	Chr11	9614216	9614235	20
Insertion	Chr12	15517904	15517905	2
Insertion	Chr2	20911076	20911079	4
Insertion	Chr2	30941300	30941309	10
Insertion	Chr6	21038970	21039007	38
Insertion	Chr9	16116159	16116160	2
Insertion	Chr9	17055483	17055483	1

Inversions: 35

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1131981	1132369
Inversion	Chr5	2229582	2229906
Inversion	Chr1	3898924	3899087	LOC_Os01g08020
Inversion	Chr11	4474964	4475333
Inversion	Chr3	6171010	6171254	LOC_Os03g11790
Inversion	Chr3	6318618	6318800	2
Inversion	Chr5	6329999	6330243	LOC_Os05g11200
Inversion	Chr4	6910379	6910569
Inversion	Chr2	7074335	7074533
Inversion	Chr3	7555382	7555806
Inversion	Chr6	9499644	9499897	LOC_Os06g16560
Inversion	Chr7	10253252	10253542
Inversion	Chr3	10378654	10379112	LOC_Os03g18520
Inversion	Chr4	12054729	12055057
Inversion	Chr7	13474685	13475113
Inversion	Chr9	13820096	13820240
Inversion	Chr5	15725799	15726248
Inversion	Chr1	16025384	16025523	LOC_Os01g28640
Inversion	Chr3	16185771	16186277	LOC_Os03g28140
Inversion	Chr2	16238200	16238421
Inversion	Chr2	17276854	17277386	2
Inversion	Chr8	19048744	19049237	2
Inversion	Chr5	20795228	20795434
Inversion	Chr8	20882044	20882289
Inversion	Chr8	20882363	20882506
Inversion	Chr1	21661254	21661410
Inversion	Chr4	22990557	22990947
Inversion	Chr6	27432810	27433103
Inversion	Chr3	29045512	29045933	LOC_Os03g50850
Inversion	Chr4	30214981	31167600
Inversion	Chr4	30215004	31167603
Inversion	Chr3	31625994	31626279	LOC_Os03g55570
Inversion	Chr3	31662641	31662773	LOC_Os03g55610
Inversion	Chr3	32270918	32271099	LOC_Os03g56660
Inversion	Chr1	32351382	32351719	LOC_Os01g56190

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	23183621	Chr6	23504877	LOC_Os12g37760
Translocation	Chr5	27683386	Chr3	10461181

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