Search Results
| Mutant Information |
|---|
| Mutant Name | FN2123-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2123-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
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| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10927559 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g19310 |
| SBS | Chr1 | 18438362 | G-A | HET | ||
| SBS | Chr1 | 36057004 | A-T | Homo | ||
| SBS | Chr1 | 41258970 | G-C | HET | ||
| SBS | Chr2 | 3059468 | T-C | Homo | ||
| SBS | Chr4 | 1418219 | T-C | HET | ||
| SBS | Chr4 | 21939352 | G-A | HET | ||
| SBS | Chr4 | 23800004 | G-A | Homo | ||
| SBS | Chr4 | 24325405 | G-A | HET | ||
| SBS | Chr5 | 4489627 | C-A | HET | ||
| SBS | Chr6 | 5434705 | G-T | Homo | ||
| SBS | Chr6 | 10114216 | A-G | HET | ||
| SBS | Chr6 | 25954392 | C-T | HET | ||
| SBS | Chr6 | 25954822 | G-T | HET | ||
| SBS | Chr6 | 26534412 | T-A | HET | ||
| SBS | Chr6 | 29217891 | C-A | HET | ||
| SBS | Chr7 | 29066040 | C-G | HET | ||
| SBS | Chr8 | 7512820 | G-A | Homo | ||
| SBS | Chr8 | 15422427 | A-G | HET | ||
| SBS | Chr8 | 19647221 | C-T | HET | ||
| SBS | Chr8 | 28297002 | A-G | HET | ||
| SBS | Chr8 | 28297012 | T-A | HET | ||
| SBS | Chr8 | 28297013 | G-A | HET | ||
| SBS | Chr9 | 12057349 | C-T | HET | ||
| SBS | Chr9 | 22406188 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g39034 |
| SBS | Chr10 | 8477129 | G-A | HET | ||
| SBS | Chr10 | 8804180 | C-T | HET | ||
| SBS | Chr11 | 881730 | G-A | Homo | ||
| SBS | Chr11 | 3730075 | G-A | HET | ||
| SBS | Chr11 | 14793118 | G-A | HET | ||
| SBS | Chr11 | 22942002 | G-A | Homo | STOP_GAINED | LOC_Os11g38660 |
| SBS | Chr12 | 27339146 | A-G | HET |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 702647 | 702648 | 1 | |
| Deletion | Chr1 | 3897179 | 3897180 | 1 | |
| Deletion | Chr11 | 4293127 | 4293132 | 5 | |
| Deletion | Chr11 | 5834447 | 5834462 | 15 | |
| Deletion | Chr12 | 9827590 | 9827602 | 12 | |
| Deletion | Chr8 | 14393320 | 14393322 | 2 | |
| Deletion | Chr7 | 16168413 | 16168417 | 4 | LOC_Os07g27720 |
| Deletion | Chr3 | 17407808 | 17407809 | 1 | LOC_Os03g30510 |
| Deletion | Chr12 | 24821975 | 24821976 | 1 | LOC_Os12g40130 |
| Deletion | Chr4 | 25184085 | 25184086 | 1 | LOC_Os04g42570 |
| Deletion | Chr4 | 26203867 | 26203872 | 5 | |
| Deletion | Chr6 | 26294481 | 26294484 | 3 | |
| Deletion | Chr7 | 27295642 | 27295648 | 6 | |
| Deletion | Chr2 | 28525300 | 28525301 | 1 | |
| Deletion | Chr1 | 32990636 | 32990637 | 1 | LOC_Os01g57082 |
| Deletion | Chr1 | 33682268 | 33682269 | 1 | |
| Deletion | Chr1 | 36079153 | 36079154 | 1 |
No Insertion
Inversions: 11
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 633884 | 634201 | LOC_Os05g02120 |
| Inversion | Chr5 | 686321 | 686537 | LOC_Os05g02180 |
| Inversion | Chr12 | 780043 | 1182889 | LOC_Os12g02385 |
| Inversion | Chr12 | 780044 | 1182895 | LOC_Os12g02385 |
| Inversion | Chr8 | 8238700 | 8238882 | |
| Inversion | Chr8 | 15615383 | 15615717 | |
| Inversion | Chr9 | 19202612 | 19202763 | LOC_Os09g32180 |
| Inversion | Chr11 | 19657103 | 19657375 | LOC_Os11g33250 |
| Inversion | Chr8 | 25358224 | 25358341 | LOC_Os08g40040 |
| Inversion | Chr1 | 34603431 | 34603689 | |
| Inversion | Chr1 | 40190259 | 40190514 | LOC_Os01g69130 |
No Translocation