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Mutant Information

Mutant Name	FN2124-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2124-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 50

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14647740	C-A	Homo
SBS	Chr1	27111775	G-C	Homo
SBS	Chr1	32373485	C-T	HET
SBS	Chr1	42233505	A-G	HET
SBS	Chr1	42250379	A-G	HET
SBS	Chr2	23833839	G-A	HET
SBS	Chr3	1452384	C-T	Homo
SBS	Chr3	1452385	C-T	Homo
SBS	Chr3	17223868	C-T	HET
SBS	Chr3	32082567	C-T	Homo
SBS	Chr3	33204073	T-A	Homo
SBS	Chr4	566632	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g01900
SBS	Chr4	1121403	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g02870
SBS	Chr4	1151375	G-T	HET
SBS	Chr4	17030747	C-A	HET
SBS	Chr4	25881095	C-T	HET
SBS	Chr4	33358305	T-C	HET
SBS	Chr5	4354544	C-G	Homo
SBS	Chr5	4794471	C-T	Homo
SBS	Chr6	1475549	A-T	HET
SBS	Chr6	3404481	A-G	Homo
SBS	Chr6	7361456	C-T	Homo
SBS	Chr6	15807072	C-T	HET
SBS	Chr6	24180715	C-T	Homo
SBS	Chr6	24796043	C-T	HET
SBS	Chr7	22317659	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g37240
SBS	Chr7	22710315	G-A	HET
SBS	Chr7	28169912	G-A	Homo
SBS	Chr8	2542860	T-A	HET
SBS	Chr8	6273689	T-A	HET
SBS	Chr8	7516616	T-C	Homo
SBS	Chr8	7729375	C-T	HET
SBS	Chr8	10897774	G-C	HET
SBS	Chr8	13468899	A-T	Homo
SBS	Chr8	21896232	G-A	HET
SBS	Chr8	21896233	C-T	HET
SBS	Chr9	10150671	T-A	HET
SBS	Chr9	12180266	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g20300
SBS	Chr10	1553072	C-G	HET
SBS	Chr10	1895170	G-A	HET
SBS	Chr10	15281431	C-T	HET
SBS	Chr11	13854698	T-C	HET
SBS	Chr11	18667803	C-G	Homo
SBS	Chr12	10043662	G-T	HET
SBS	Chr12	10729904	T-C	HET
SBS	Chr12	13172279	G-A	HET
SBS	Chr12	13580922	A-G	HET
SBS	Chr12	14600119	A-G	HET
SBS	Chr12	25418010	A-G	HET
SBS	Chr12	27202446	T-C	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1284473	1284474	1
Deletion	Chr11	2418001	2478000	59999	11
Deletion	Chr6	3392164	3392171	7
Deletion	Chr9	5157407	5157408	1	LOC_Os09g09550
Deletion	Chr10	15989649	15989663	14
Deletion	Chr6	16185368	16185371	3
Deletion	Chr10	16786358	16786360	2
Deletion	Chr7	21615815	21615816	1
Deletion	Chr5	25522542	25522554	12
Deletion	Chr5	26605001	26675000	69999	11
Deletion	Chr8	27002081	27002082	1
Deletion	Chr3	33655147	33655148	1
Deletion	Chr1	42199934	42199937	3

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	7656466	7656467	2
Insertion	Chr7	8338880	8338881	2
Insertion	Chr7	24289012	24289013	2
Insertion	Chr3	12756958	12756958	1
Insertion	Chr4	31050413	31050422	10
Insertion	Chr5	10038265	10038266	2
Insertion	Chr8	5415375	5415425	51
Insertion	Chr8	22128873	22128873	1

Inversions: 18

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	751228	751563
Inversion	Chr6	2326951	2327420
Inversion	Chr11	4234364	4234906	LOC_Os11g08090
Inversion	Chr8	6190538	6841074	LOC_Os08g10540
Inversion	Chr1	16298626	16299105	LOC_Os01g29104
Inversion	Chr5	17968672	17968828	LOC_Os05g30950
Inversion	Chr10	21838024	21838181
Inversion	Chr4	21868184	21868298
Inversion	Chr12	22454576	22454759
Inversion	Chr6	23099396	23099751	LOC_Os06g38940
Inversion	Chr6	23337495	23337876
Inversion	Chr7	25601066	25601434
Inversion	Chr7	25615795	25616035	LOC_Os07g42760
Inversion	Chr5	25616184	25616503	LOC_Os05g44030
Inversion	Chr3	27369389	27369652
Inversion	Chr5	28829664	28829783
Inversion	Chr1	34521012	34521160
Inversion	Chr4	35106854	35107118	LOC_Os04g59010

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	14645205	Chr4	3954961	LOC_Os08g24260
Translocation	Chr10	17670230	Chr2	24459329
Translocation	Chr8	24363151	Chr2	1947526	2

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