Search Results
| Mutant Information |
|---|
| Mutant Name | FN2125-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2125-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 39
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 30982612 | G-A | HET | ||
| SBS | Chr1 | 42689210 | A-T | HET | ||
| SBS | Chr2 | 16101200 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g27320 |
| SBS | Chr2 | 18537925 | T-C | HET | ||
| SBS | Chr2 | 27055819 | T-C | HET | ||
| SBS | Chr2 | 30597803 | G-A | Homo | ||
| SBS | Chr2 | 32443416 | G-A | Homo | ||
| SBS | Chr3 | 12004686 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g21080 |
| SBS | Chr3 | 14964857 | T-C | HET | ||
| SBS | Chr3 | 34245146 | T-A | HET | ||
| SBS | Chr3 | 34352986 | G-A | HET | ||
| SBS | Chr4 | 7592570 | C-A | Homo | ||
| SBS | Chr4 | 14805543 | G-A | Homo | ||
| SBS | Chr4 | 23657729 | G-A | HET | ||
| SBS | Chr4 | 24696392 | A-G | HET | ||
| SBS | Chr5 | 18674949 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g32050 |
| SBS | Chr5 | 24599069 | A-G | HET | ||
| SBS | Chr5 | 26962100 | A-T | HET | ||
| SBS | Chr6 | 12672722 | C-T | Homo | ||
| SBS | Chr6 | 14557880 | G-A | HET | ||
| SBS | Chr6 | 17652576 | T-A | Homo | ||
| SBS | Chr6 | 27969556 | G-A | HET | ||
| SBS | Chr6 | 28604747 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g47170 |
| SBS | Chr6 | 28618916 | C-A | HET | ||
| SBS | Chr6 | 28623725 | G-T | HET | ||
| SBS | Chr7 | 8169146 | T-C | Homo | ||
| SBS | Chr7 | 8437178 | G-T | Homo | ||
| SBS | Chr7 | 22693691 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os07g37840 |
| SBS | Chr7 | 24431999 | T-A | HET | ||
| SBS | Chr7 | 25757361 | C-G | HET | ||
| SBS | Chr8 | 22600892 | C-T | HET | ||
| SBS | Chr9 | 7847293 | C-T | Homo | ||
| SBS | Chr9 | 13805119 | C-G | Homo | ||
| SBS | Chr9 | 16840118 | C-A | Homo | ||
| SBS | Chr11 | 2004814 | G-A | Homo | ||
| SBS | Chr11 | 23838192 | G-A | Homo | ||
| SBS | Chr12 | 3563649 | A-G | HET | ||
| SBS | Chr12 | 11733755 | G-C | HET | ||
| SBS | Chr12 | 17641584 | C-T | Homo |
Deletions: 16
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 21006136 | 21006137 | 2 | |
| Insertion | Chr5 | 5887740 | 5887740 | 1 | LOC_Os05g10700 |
| Insertion | Chr7 | 25239681 | 25239686 | 6 |
Inversions: 42
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 611157 | 611513 | LOC_Os04g01980 |
| Inversion | Chr8 | 803351 | 803650 | |
| Inversion | Chr6 | 850920 | 851546 | LOC_Os06g02460 |
| Inversion | Chr9 | 2220272 | 2220651 | LOC_Os09g04210 |
| Inversion | Chr3 | 3112481 | 3113040 | LOC_Os03g06200 |
| Inversion | Chr4 | 3418679 | 3419040 | LOC_Os04g06510 |
| Inversion | Chr3 | 3737741 | 3738098 | |
| Inversion | Chr1 | 4442738 | 4442982 | |
| Inversion | Chr5 | 5972520 | 5972778 | LOC_Os05g10810 |
| Inversion | Chr8 | 7588655 | 7588987 | |
| Inversion | Chr8 | 8315716 | 8315910 | |
| Inversion | Chr12 | 9179584 | 9179855 | LOC_Os12g16080 |
| Inversion | Chr9 | 9779792 | 9780179 | LOC_Os09g16000 |
| Inversion | Chr10 | 10177696 | 10178152 | |
| Inversion | Chr10 | 12868992 | 12869311 | LOC_Os10g25000 |
| Inversion | Chr5 | 13070896 | 13071039 | LOC_Os05g22940 |
| Inversion | Chr3 | 14110880 | 14111237 | |
| Inversion | Chr7 | 14674924 | 14675305 | LOC_Os07g25590 |
| Inversion | Chr2 | 16577430 | 16577641 | |
| Inversion | Chr6 | 17912582 | 17912866 | |
| Inversion | Chr5 | 18733419 | 18733894 | LOC_Os05g32130 |
| Inversion | Chr10 | 19068363 | 19068864 | |
| Inversion | Chr5 | 20569861 | 20570352 | LOC_Os05g34670 |
| Inversion | Chr6 | 21185350 | 21185768 | LOC_Os06g36180 |
| Inversion | Chr9 | 21216831 | 21217094 | LOC_Os09g36770 |
| Inversion | Chr8 | 21647231 | 21647743 | LOC_Os08g34500 |
| Inversion | Chr3 | 24174658 | 24616405 | 2 |
| Inversion | Chr6 | 24987614 | 24987986 | LOC_Os06g41710 |
| Inversion | Chr8 | 25910641 | 25911043 | LOC_Os08g40940 |
| Inversion | Chr7 | 26382121 | 26382471 | |
| Inversion | Chr12 | 26997202 | 26997640 | 2 |
| Inversion | Chr3 | 27807243 | 27807664 | |
| Inversion | Chr5 | 27903408 | 27903538 | |
| Inversion | Chr1 | 29338806 | 29339011 | |
| Inversion | Chr3 | 31069453 | 31069732 | |
| Inversion | Chr1 | 31738545 | 31739009 | LOC_Os01g55170 |
| Inversion | Chr3 | 32438968 | 32439092 | |
| Inversion | Chr4 | 32657498 | 32657851 | 2 |
| Inversion | Chr4 | 32682346 | 32682700 | |
| Inversion | Chr2 | 34694880 | 34695325 | |
| Inversion | Chr1 | 38713323 | 38713539 | LOC_Os01g66650 |
| Inversion | Chr1 | 41678315 | 41678593 | LOC_Os01g71930 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 14930136 | Chr7 | 19139293 | |
| Translocation | Chr11 | 19839683 | Chr4 | 2841952 | LOC_Os11g33942 |
| Translocation | Chr8 | 21202326 | Chr4 | 18656575 | 2 |
| Translocation | Chr9 | 21806677 | Chr5 | 6399610 | LOC_Os09g37840 |
| Translocation | Chr7 | 23511158 | Chr4 | 24006723 | |
| Translocation | Chr7 | 23514356 | Chr4 | 24006711 | LOC_Os07g39280 |