Search Results
Mutant Information |
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Mutant Name | FN2149-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2149-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 37
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
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SBS | Chr1 | 7232034 | T-C | HET | ||
SBS | Chr1 | 12938926 | C-A | Homo | ||
SBS | Chr1 | 21193453 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g37860 |
SBS | Chr1 | 28201808 | T-G | HET | ||
SBS | Chr1 | 34031737 | G-A | HET | ||
SBS | Chr2 | 24183442 | C-T | HET | ||
SBS | Chr2 | 29691738 | A-C | Homo | ||
SBS | Chr3 | 10516143 | A-G | HET | ||
SBS | Chr3 | 11546084 | A-C | HET | ||
SBS | Chr3 | 33546713 | G-A | HET | ||
SBS | Chr4 | 13293994 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g23290 |
SBS | Chr4 | 23381239 | G-A | Homo | ||
SBS | Chr4 | 27101018 | G-T | Homo | ||
SBS | Chr5 | 5154448 | C-A | Homo | ||
SBS | Chr5 | 19484392 | C-A | Homo | ||
SBS | Chr6 | 12887652 | G-A | HET | ||
SBS | Chr6 | 16233002 | C-T | HET | ||
SBS | Chr6 | 24537203 | A-G | HET | ||
SBS | Chr6 | 24676054 | A-T | HET | ||
SBS | Chr7 | 2458484 | T-G | Homo | ||
SBS | Chr7 | 12964581 | C-A | HET | ||
SBS | Chr7 | 14855544 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os07g25860 |
SBS | Chr7 | 16188396 | C-A | HET | ||
SBS | Chr8 | 7170581 | C-T | Homo | ||
SBS | Chr8 | 9601011 | G-A | Homo | ||
SBS | Chr8 | 11002016 | G-A | HET | ||
SBS | Chr8 | 14925849 | A-C | HET | ||
SBS | Chr8 | 17598255 | G-A | Homo | ||
SBS | Chr9 | 7323076 | G-T | HET | ||
SBS | Chr9 | 21095647 | G-T | HET | ||
SBS | Chr9 | 21095648 | A-T | HET | ||
SBS | Chr11 | 10378174 | G-A | Homo | ||
SBS | Chr12 | 7825627 | C-T | HET | ||
SBS | Chr12 | 8888459 | C-G | HET | ||
SBS | Chr12 | 11176061 | G-A | HET | ||
SBS | Chr12 | 12587624 | T-A | HET | ||
SBS | Chr12 | 21863103 | C-T | HET |
Deletions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr10 | 8139131 | 8139132 | 1 | |
Deletion | Chr10 | 19328166 | 19328174 | 8 | |
Deletion | Chr4 | 34930336 | 34930341 | 5 |
Insertions: 5
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 838106 | 838106 | 1 | LOC_Os01g02540 |
Insertion | Chr2 | 22502567 | 22502584 | 18 | |
Insertion | Chr2 | 23195349 | 23195349 | 1 | |
Insertion | Chr5 | 2059065 | 2059065 | 1 | |
Insertion | Chr6 | 13728966 | 13728967 | 2 |
Inversions: 12
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
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Inversion | Chr5 | 669252 | 669613 | |
Inversion | Chr5 | 2730307 | 2730679 | LOC_Os05g05480 |
Inversion | Chr10 | 10640471 | 10640846 | LOC_Os10g21000 |
Inversion | Chr8 | 14325622 | 14325990 | LOC_Os08g23680 |
Inversion | Chr7 | 14622895 | 14623260 | |
Inversion | Chr8 | 15236768 | 15237032 | |
Inversion | Chr2 | 17807551 | 18495154 | LOC_Os02g29960 |
Inversion | Chr1 | 21160428 | 21160846 | LOC_Os01g37825 |
Inversion | Chr12 | 21878891 | 21879002 | |
Inversion | Chr11 | 21910637 | 21910796 | LOC_Os11g37110 |
Inversion | Chr11 | 28704434 | 28704920 | LOC_Os11g47460 |
Inversion | Chr1 | 32605227 | 32605415 |
Translocations: 9
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr7 | 629783 | Chr4 | 18817589 | |
Translocation | Chr12 | 7804466 | Chr2 | 25317078 | LOC_Os12g13800 |
Translocation | Chr9 | 11649636 | Chr4 | 18885957 | |
Translocation | Chr6 | 12121264 | Chr4 | 27611875 | 2 |
Translocation | Chr6 | 12121270 | Chr4 | 27612154 | 2 |
Translocation | Chr6 | 20299203 | Chr4 | 33820665 | |
Translocation | Chr10 | 22201796 | Chr6 | 11350335 | LOC_Os10g41310 |
Translocation | Chr12 | 22800133 | Chr9 | 11649655 | LOC_Os12g37180 |
Translocation | Chr4 | 26202195 | Chr1 | 14522653 | LOC_Os04g44230 |