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Mutant Information

Mutant Name	FN2149-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2149-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12938926	C-A	Homo
SBS	Chr1	21193453	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g37860
SBS	Chr1	28201808	T-G	HET
SBS	Chr1	34031737	G-A	HET
SBS	Chr1	7232034	T-C	HET
SBS	Chr11	10378174	G-A	Homo
SBS	Chr12	11176061	G-A	HET
SBS	Chr12	12587624	T-A	HET
SBS	Chr12	21863103	C-T	HET
SBS	Chr12	7825627	C-T	HET
SBS	Chr12	8888459	C-G	HET
SBS	Chr2	24183442	C-T	HET
SBS	Chr2	29691738	A-C	Homo
SBS	Chr3	10516143	A-G	HET
SBS	Chr3	11546084	A-C	HET
SBS	Chr3	33546713	G-A	HET
SBS	Chr4	13293994	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g23290
SBS	Chr4	23381239	G-A	Homo
SBS	Chr4	27101018	G-T	Homo
SBS	Chr5	19484392	C-A	Homo
SBS	Chr5	5154448	C-A	Homo
SBS	Chr6	12887652	G-A	HET
SBS	Chr6	16233002	C-T	HET
SBS	Chr6	24537203	A-G	HET
SBS	Chr6	24676054	A-T	HET
SBS	Chr7	12964581	C-A	HET
SBS	Chr7	14855544	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g25860
SBS	Chr7	16188396	C-A	HET
SBS	Chr7	2458484	T-G	Homo
SBS	Chr8	11002016	G-A	HET
SBS	Chr8	14925849	A-C	HET
SBS	Chr8	17598255	G-A	Homo
SBS	Chr8	7170581	C-T	Homo
SBS	Chr8	9601011	G-A	Homo
SBS	Chr9	21095647	G-T	HET
SBS	Chr9	21095648	A-T	HET
SBS	Chr9	7323076	G-T	HET

Deletions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Deletion	Chr10	8139131	8139132	1
Deletion	Chr10	19328166	19328174	8
Deletion	Chr4	34930336	34930341	5

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	838106	838106	1	LOC_Os01g02540
Insertion	Chr2	22502567	22502584	18
Insertion	Chr2	23195349	23195349	1
Insertion	Chr5	2059065	2059065	1
Insertion	Chr6	13728966	13728967	2

Inversions: 12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	669252	669613
Inversion	Chr5	2730307	2730679	LOC_Os05g05480
Inversion	Chr10	10640471	10640846	LOC_Os10g21000
Inversion	Chr8	14325622	14325990	LOC_Os08g23680
Inversion	Chr7	14622895	14623260
Inversion	Chr8	15236768	15237032
Inversion	Chr2	17807551	18495154	LOC_Os02g29960
Inversion	Chr1	21160428	21160846	LOC_Os01g37825
Inversion	Chr12	21878891	21879002
Inversion	Chr11	21910637	21910796	LOC_Os11g37110
Inversion	Chr11	28704434	28704920	LOC_Os11g47460
Inversion	Chr1	32605227	32605415

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	629783	Chr4	18817589
Translocation	Chr12	7804466	Chr2	25317078	LOC_Os12g13800
Translocation	Chr9	11649636	Chr4	18885957
Translocation	Chr6	12121264	Chr4	27611875	2
Translocation	Chr6	12121270	Chr4	27612154	2
Translocation	Chr6	20299203	Chr4	33820665
Translocation	Chr10	22201796	Chr6	11350335	LOC_Os10g41310
Translocation	Chr12	22800133	Chr9	11649655	LOC_Os12g37180
Translocation	Chr4	26202195	Chr1	14522653	LOC_Os04g44230

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