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| Mutant Information |
|---|
| Mutant Name | FN2155-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2155-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
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| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 6418812 | A-T | HET | ||
| SBS | Chr11 | 11185352 | G-T | HET | ||
| SBS | Chr11 | 1847265 | G-A | Homo | ||
| SBS | Chr11 | 24725039 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g41230 |
| SBS | Chr12 | 15299100 | G-A | HET | ||
| SBS | Chr2 | 24930662 | A-G | HET | ||
| SBS | Chr2 | 68146 | T-C | Homo | ||
| SBS | Chr3 | 11012819 | G-A | HET | ||
| SBS | Chr3 | 19118999 | G-A | HET | ||
| SBS | Chr4 | 23914296 | C-T | HET | ||
| SBS | Chr5 | 24268344 | A-C | HET | ||
| SBS | Chr5 | 27176154 | G-A | Homo | ||
| SBS | Chr6 | 27898740 | A-T | HET | ||
| SBS | Chr6 | 7858552 | G-A | HET | ||
| SBS | Chr7 | 27329104 | T-A | Homo | ||
| SBS | Chr7 | 312636 | G-A | HET | ||
| SBS | Chr8 | 20643442 | G-T | HET | ||
| SBS | Chr8 | 20643443 | C-T | HET | ||
| SBS | Chr9 | 20783748 | A-T | HET | ||
| SBS | Chr9 | 22745901 | T-A | HET |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 2571072 | 2571073 | 1 | LOC_Os04g05160 |
| Deletion | Chr6 | 4098113 | 4098116 | 3 | |
| Deletion | Chr4 | 5548338 | 5548339 | 1 | LOC_Os04g10270 |
| Deletion | Chr2 | 13885634 | 13885638 | 4 | |
| Deletion | Chr11 | 18604215 | 18604487 | 272 | |
| Deletion | Chr10 | 18988001 | 18998000 | 9999 | 4 |
| Deletion | Chr5 | 27387997 | 27387998 | 1 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 10788223 | 10788224 | 2 | |
| Insertion | Chr10 | 8452042 | 8452042 | 1 | |
| Insertion | Chr11 | 23460964 | 23460973 | 10 | |
| Insertion | Chr2 | 34727403 | 34727403 | 1 | LOC_Os02g56640 |
| Insertion | Chr3 | 13512365 | 13512367 | 3 | |
| Insertion | Chr4 | 2570207 | 2570207 | 1 | LOC_Os04g05160 |
| Insertion | Chr5 | 15342362 | 15342362 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 10511168 | 10511611 | LOC_Os02g18090 |
| Inversion | Chr9 | 14544232 | 14544618 | LOC_Os09g24440 |
| Inversion | Chr1 | 31345509 | 31345708 | LOC_Os01g54490 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 3094946 | Chr2 | 16881703 | 2 |
| Translocation | Chr11 | 13474800 | Chr9 | 3412368 | 2 |
| Translocation | Chr8 | 14965389 | Chr5 | 23972056 | |
| Translocation | Chr6 | 25107112 | Chr3 | 26025218 |