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Mutant Information

Mutant Name	FN2161-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2161-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11744249	C-T	HET
SBS	Chr1	2482963	A-C	HET
SBS	Chr1	36408575	C-T	HET
SBS	Chr10	11060663	C-T	HET
SBS	Chr10	6406642	G-C	Homo
SBS	Chr11	1195730	G-A	HET
SBS	Chr11	1549188	A-G	HET
SBS	Chr11	18755744	C-A	HET
SBS	Chr11	8679484	A-G	Homo
SBS	Chr12	1600648	C-T	Homo
SBS	Chr12	25989445	A-T	HET
SBS	Chr2	10913190	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g18700
SBS	Chr2	1525918	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g03660
SBS	Chr3	13454491	G-C	HET
SBS	Chr3	1625011	G-T	Homo
SBS	Chr3	30059259	T-C	HET
SBS	Chr3	8225247	T-C	HET
SBS	Chr4	19022365	T-A	HET
SBS	Chr4	33727319	T-C	HET
SBS	Chr5	18558427	G-A	HET
SBS	Chr5	21486229	G-T	HET
SBS	Chr5	9003952	C-T	HET
SBS	Chr6	14652885	G-A	Homo
SBS	Chr6	23074349	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g38890
SBS	Chr6	5733028	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g10970
SBS	Chr7	14861586	C-T	Homo
SBS	Chr7	24689586	C-T	HET
SBS	Chr7	4810883	G-A	Homo
SBS	Chr9	12674683	G-A	HET
SBS	Chr9	12986443	T-A	HET
SBS	Chr9	9766932	C-T	HET

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	3672689	3672692	3
Deletion	Chr6	5610574	5610575	1	LOC_Os06g10740
Deletion	Chr1	12400394	12400398	4
Deletion	Chr12	13289451	13289452	1
Deletion	Chr8	22128001	22167000	38999	7
Deletion	Chr8	22171001	22322000	150999	24
Deletion	Chr12	24587178	24587193	15
Deletion	Chr1	26939874	26939876	2
Deletion	Chr1	34848700	34848708	8
Deletion	Chr3	35839871	35839872	1
Deletion	Chr1	36907333	36907335	2

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	12434813	12434814	2
Insertion	Chr11	21581488	21581488	1
Insertion	Chr2	3574739	3574739	1
Insertion	Chr2	3601055	3601056	2
Insertion	Chr3	16565733	16565734	2
Insertion	Chr3	9570690	9570727	38
Insertion	Chr7	8766718	8766718	1	LOC_Os07g15210
Insertion	Chr8	7269366	7269366	1
Insertion	Chr8	8092507	8092507	1
Insertion	Chr9	13258549	13258549	1
Insertion	Chr9	2169452	2169455	4

Inversions: 28

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	198590	199012
Inversion	Chr8	544118	544603
Inversion	Chr6	1456288	1456556	LOC_Os06g03690
Inversion	Chr6	3970185	3970462
Inversion	Chr8	4553319	4553502	LOC_Os08g08030
Inversion	Chr10	4876888	4877175
Inversion	Chr4	5254916	5255105	LOC_Os04g09800
Inversion	Chr11	5400994	5401296	LOC_Os11g10060
Inversion	Chr5	6821704	6822002
Inversion	Chr5	7140642	7140844	LOC_Os05g12420
Inversion	Chr5	8607722	8607838	LOC_Os05g15160
Inversion	Chr5	9181262	9181367
Inversion	Chr4	13814183	13814400
Inversion	Chr6	16133973	16134093	LOC_Os06g28370
Inversion	Chr12	17794007	17794399
Inversion	Chr3	17931441	17931563	LOC_Os03g31460
Inversion	Chr10	18819872	18820018
Inversion	Chr9	21397362	21397479	LOC_Os09g37100
Inversion	Chr10	21525741	21525930
Inversion	Chr11	22275303	22275465	LOC_Os11g37700
Inversion	Chr5	23252120	23252276	LOC_Os05g39600
Inversion	Chr6	23956102	23956297	2
Inversion	Chr6	23956674	23957138	LOC_Os06g40220
Inversion	Chr5	26303689	26304012	LOC_Os05g45340
Inversion	Chr4	27571956	27572173	LOC_Os04g46480
Inversion	Chr6	29384429	29384730	LOC_Os06g48570
Inversion	Chr1	29877758	29877919
Inversion	Chr1	35752743	35752916	LOC_Os01g61800

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	8255468	Chr2	14361985	LOC_Os03g15120
Translocation	Chr2	14983934	Chr1	20917486
Translocation	Chr9	18095053	Chr4	34904195	2
Translocation	Chr8	27530336	Chr3	31848814	LOC_Os08g43530

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