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Mutant Information

Mutant Name	FN2169-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2169-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32570228	A-G	HET
SBS	Chr1	41516995	G-T	HET
SBS	Chr10	12101135	G-A	Homo
SBS	Chr10	19122587	C-A	HET
SBS	Chr11	17053607	A-T	HET
SBS	Chr11	2894178	A-G	Homo
SBS	Chr11	8280508	T-G	Homo
SBS	Chr12	9793993	C-T	HET
SBS	Chr2	31600065	G-A	HET
SBS	Chr2	32403680	A-T	HET
SBS	Chr3	6560337	T-C	HET
SBS	Chr4	30575186	C-G	HET
SBS	Chr5	20706076	G-A	Homo
SBS	Chr6	10916658	A-T	Homo
SBS	Chr6	16595957	T-A	Homo
SBS	Chr6	20565593	G-A	Homo
SBS	Chr7	10961947	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g18520
SBS	Chr7	19007593	A-T	HET
SBS	Chr8	12681688	T-A	HET
SBS	Chr8	14291905	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g23610
SBS	Chr8	1959719	G-A	HET
SBS	Chr8	7428212	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g12550

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	813001	835000	21999	4
Deletion	Chr6	836922	836927	5	LOC_Os06g02430
Deletion	Chr9	1621326	1621327	1
Deletion	Chr9	2058653	2058654	1
Deletion	Chr7	6007200	6007211	11
Deletion	Chr6	6074566	6074567	1
Deletion	Chr7	10506161	10506162	1	LOC_Os07g17780
Deletion	Chr1	10884004	10884006	2
Deletion	Chr11	12116006	12116007	1
Deletion	Chr9	12921189	12921202	13
Deletion	Chr1	13570877	13570878	1
Deletion	Chr9	16620322	16620328	6
Deletion	Chr6	16760304	16760307	3
Deletion	Chr11	20227323	20228175	852
Deletion	Chr2	22489134	22489135	1	LOC_Os02g37220
Deletion	Chr2	26080001	26201000	120999	15
Deletion	Chr3	26558001	26574000	15999	3
Deletion	Chr4	27579001	27593000	13999	4
Deletion	Chr2	28762384	28762385	1	LOC_Os02g47120
Deletion	Chr6	30334819	30334821	2	LOC_Os06g50050
Deletion	Chr4	33233001	33245000	11999	2

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	35934243	35934243	1
Insertion	Chr11	23450674	23450674	1
Insertion	Chr12	4126796	4126796	1
Insertion	Chr3	22759606	22759611	6
Insertion	Chr4	12265757	12265757	1
Insertion	Chr7	7817833	7817833	1
Insertion	Chr9	4160493	4160518	26

Inversions: 11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	6368136	6940282	LOC_Os08g10810
Inversion	Chr1	6449622	6450012	LOC_Os01g11900
Inversion	Chr11	11268070	11268454	LOC_Os11g19550
Inversion	Chr9	11452229	11452441	LOC_Os09g19160
Inversion	Chr4	12121911	12122134
Inversion	Chr5	20090517	20090629	LOC_Os05g34010
Inversion	Chr2	20875984	20877037
Inversion	Chr2	22976925	22977124
Inversion	Chr2	32442445	32442632
Inversion	Chr2	35140073	35140182
Inversion	Chr1	35416318	35416585	LOC_Os01g61190

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	752301	Chr3	15248851	2
Translocation	Chr11	916018	Chr3	3015431	LOC_Os11g02778
Translocation	Chr9	1487674	Chr8	23352812	LOC_Os09g03110
Translocation	Chr11	6833382	Chr9	6665334	LOC_Os11g12240
Translocation	Chr4	17332411	Chr3	16470299	LOC_Os04g29224
Translocation	Chr6	18248649	Chr4	2918258	2
Translocation	Chr7	18988652	Chr3	16448949
Translocation	Chr12	19030375	Chr11	28433553	2
Translocation	Chr7	19555902	Chr2	25382838	2
Translocation	Chr9	19806187	Chr2	18843873
Translocation	Chr6	20520242	Chr1	21476034
Translocation	Chr11	22976958	Chr7	3511806	2
Translocation	Chr4	32281427	Chr3	21730881	2

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