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| Mutant Information |
|---|
| Mutant Name | FN2172-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2172-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15139921 | T-C | HET | ||
| SBS | Chr1 | 16156299 | A-G | HET | ||
| SBS | Chr1 | 28575831 | T-C | Homo | ||
| SBS | Chr10 | 20921731 | T-A | Homo | ||
| SBS | Chr10 | 3441399 | G-A | HET | ||
| SBS | Chr11 | 3494314 | G-C | HET | ||
| SBS | Chr12 | 11776427 | G-A | HET | ||
| SBS | Chr12 | 14132386 | A-G | HET | ||
| SBS | Chr12 | 16373487 | C-A | HET | ||
| SBS | Chr12 | 25811358 | A-T | Homo | ||
| SBS | Chr2 | 12881435 | C-T | Homo | ||
| SBS | Chr2 | 20891847 | T-C | HET | ||
| SBS | Chr2 | 23813877 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g39470 |
| SBS | Chr2 | 27465057 | C-T | HET | ||
| SBS | Chr2 | 32258921 | G-T | HET | ||
| SBS | Chr2 | 6828217 | A-G | Homo | ||
| SBS | Chr2 | 8962221 | A-G | HET | ||
| SBS | Chr3 | 19431146 | A-T | HET | ||
| SBS | Chr3 | 2893819 | G-A | HET | ||
| SBS | Chr3 | 28999730 | T-A | Homo | ||
| SBS | Chr3 | 29617576 | A-G | Homo | ||
| SBS | Chr4 | 11797752 | C-T | HET | ||
| SBS | Chr4 | 26827558 | G-T | HET | ||
| SBS | Chr5 | 11414416 | G-A | HET | ||
| SBS | Chr5 | 14591026 | G-A | Homo | ||
| SBS | Chr5 | 14591027 | G-A | Homo | ||
| SBS | Chr5 | 3992940 | T-A | Homo | ||
| SBS | Chr6 | 17570819 | C-A | HET | ||
| SBS | Chr6 | 17775427 | C-A | HET | ||
| SBS | Chr6 | 22502342 | C-A | HET | ||
| SBS | Chr6 | 3490407 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g07280 |
| SBS | Chr7 | 13484420 | T-A | Homo | ||
| SBS | Chr7 | 25979565 | C-G | HET | ||
| SBS | Chr8 | 567782 | T-G | Homo | ||
| SBS | Chr9 | 11724773 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g19610 |
| SBS | Chr9 | 13145534 | G-A | HET | ||
| SBS | Chr9 | 4370061 | A-G | HET |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 5098088 | 5098089 | 1 | LOC_Os04g09520 |
| Deletion | Chr2 | 6825634 | 6825643 | 9 | |
| Deletion | Chr11 | 7243844 | 7243845 | 1 | |
| Deletion | Chr7 | 10189593 | 10189598 | 5 | |
| Deletion | Chr3 | 15353738 | 15353739 | 1 | |
| Deletion | Chr10 | 15755487 | 15755494 | 7 | LOC_Os10g30340 |
| Deletion | Chr11 | 16000001 | 16148000 | 147999 | 29 |
| Deletion | Chr11 | 16476001 | 16487000 | 10999 | 3 |
| Deletion | Chr11 | 16493001 | 16534000 | 40999 | 2 |
Insertions: 5
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 5367113 | 5367374 | |
| Inversion | Chr6 | 7566847 | 7567073 | LOC_Os06g13650 |
| Inversion | Chr11 | 16476317 | 16496827 | LOC_Os11g28570 |
| Inversion | Chr10 | 19772998 | 19773369 | |
| Inversion | Chr2 | 29309092 | 29309379 | |
| Inversion | Chr1 | 41009999 | 41010548 |
Translocations: 10
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 1635438 | Chr6 | 26814581 | |
| Translocation | Chr11 | 2474541 | Chr6 | 24981541 | |
| Translocation | Chr8 | 6761144 | Chr5 | 8422520 | |
| Translocation | Chr11 | 7337530 | Chr5 | 14772939 | 2 |
| Translocation | Chr9 | 9415222 | Chr1 | 24727018 | |
| Translocation | Chr2 | 10241411 | Chr1 | 37257793 | |
| Translocation | Chr12 | 17680346 | Chr1 | 33032430 | |
| Translocation | Chr12 | 18610625 | Chr7 | 4111343 | LOC_Os12g30980 |
| Translocation | Chr7 | 18879305 | Chr6 | 10144180 | |
| Translocation | Chr7 | 21040730 | Chr5 | 15752963 |