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| Mutant Information |
|---|
| Mutant Name | FN2175-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2175-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 18777520 | C-A | HET | ||
| SBS | Chr1 | 7042525 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g12720 |
| SBS | Chr1 | 7505780 | G-A | HET | ||
| SBS | Chr10 | 1423778 | A-T | Homo | ||
| SBS | Chr10 | 19421490 | A-T | HET | ||
| SBS | Chr10 | 20051521 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os10g37468 |
| SBS | Chr11 | 16720335 | A-G | HET | ||
| SBS | Chr11 | 9460763 | C-T | HET | ||
| SBS | Chr12 | 2073079 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g04830 |
| SBS | Chr12 | 24228014 | T-G | HET | ||
| SBS | Chr2 | 20564666 | C-T | Homo | ||
| SBS | Chr2 | 2262697 | C-T | HET | ||
| SBS | Chr3 | 10045023 | G-A | HET | ||
| SBS | Chr3 | 2449640 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g05030 |
| SBS | Chr3 | 25596905 | T-C | HET | ||
| SBS | Chr3 | 27411296 | A-G | HET | ||
| SBS | Chr4 | 2151997 | A-G | Homo | ||
| SBS | Chr4 | 25940180 | T-C | Homo | ||
| SBS | Chr4 | 7296742 | G-C | Homo | ||
| SBS | Chr5 | 6101006 | T-C | Homo | ||
| SBS | Chr5 | 818597 | A-T | HET | ||
| SBS | Chr5 | 9790463 | G-A | Homo | ||
| SBS | Chr6 | 12524160 | A-T | HET | ||
| SBS | Chr6 | 737098 | C-A | HET | ||
| SBS | Chr7 | 13883151 | C-G | HET | ||
| SBS | Chr7 | 23596619 | A-C | HET | ||
| SBS | Chr8 | 10870979 | A-C | Homo | ||
| SBS | Chr8 | 1278639 | A-C | HET | ||
| SBS | Chr8 | 14910857 | G-A | HET | ||
| SBS | Chr8 | 21317561 | T-A | Homo | ||
| SBS | Chr8 | 26844431 | C-T | HET | ||
| SBS | Chr8 | 5330419 | C-A | HET | SPLICE_SITE_ACCEPTOR | LOC_Os08g09200 |
| SBS | Chr9 | 16905094 | A-T | Homo | ||
| SBS | Chr9 | 21455976 | C-T | Homo | ||
| SBS | Chr9 | 21457313 | C-A | Homo |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 2628001 | 3003000 | 374999 | 50 |
| Deletion | Chr1 | 7835878 | 7835906 | 28 | |
| Deletion | Chr10 | 8093846 | 8093893 | 47 | |
| Deletion | Chr12 | 9434683 | 9434689 | 6 | |
| Deletion | Chr9 | 10136507 | 10136508 | 1 | |
| Deletion | Chr11 | 10957001 | 10982000 | 24999 | 4 |
| Deletion | Chr1 | 14684001 | 14712000 | 27999 | 5 |
| Deletion | Chr3 | 14942771 | 14942772 | 1 | |
| Deletion | Chr6 | 16373639 | 16373640 | 1 | LOC_Os06g28750 |
| Deletion | Chr8 | 19105391 | 19105396 | 5 | LOC_Os08g30940 |
| Deletion | Chr4 | 19700274 | 19700283 | 9 | |
| Deletion | Chr2 | 20537319 | 20537320 | 1 | |
| Deletion | Chr9 | 21456061 | 21456075 | 14 | |
| Deletion | Chr11 | 22117557 | 22117649 | 92 | |
| Deletion | Chr1 | 36614284 | 36614288 | 4 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 5085749 | 5085749 | 1 | |
| Insertion | Chr11 | 9618851 | 9618851 | 1 | LOC_Os11g17270 |
| Insertion | Chr12 | 4228115 | 4228117 | 3 | |
| Insertion | Chr4 | 3332188 | 3332188 | 1 | |
| Insertion | Chr4 | 4244006 | 4244006 | 1 | |
| Insertion | Chr5 | 29931151 | 29931151 | 1 | |
| Insertion | Chr8 | 26680580 | 26680580 | 1 |
Inversions: 7
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 6326020 | 6326208 | LOC_Os04g11550 |
| Inversion | Chr1 | 8484056 | 8484207 | |
| Inversion | Chr11 | 9094002 | 9094235 | LOC_Os11g16430 |
| Inversion | Chr2 | 10892342 | 11125334 | |
| Inversion | Chr2 | 10892344 | 11125337 | |
| Inversion | Chr4 | 25640801 | 25641128 | LOC_Os04g43360 |
| Inversion | Chr3 | 32868261 | 32868437 | LOC_Os03g57670 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 1050738 | Chr2 | 34774040 | |
| Translocation | Chr9 | 9104328 | Chr4 | 17791425 | 2 |
| Translocation | Chr12 | 9725448 | Chr9 | 13612954 | |
| Translocation | Chr9 | 13592202 | Chr5 | 18557692 | |
| Translocation | Chr9 | 13690484 | Chr5 | 18555112 | LOC_Os09g23140 |
| Translocation | Chr6 | 23550549 | Chr3 | 11224769 | 2 |
| Translocation | Chr3 | 25386607 | Chr1 | 15783894 | |
| Translocation | Chr3 | 34955757 | Chr1 | 14809236 | LOC_Os03g61670 |