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Mutant Information

Mutant Name	FN2177-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2177-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13985196	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g24830
SBS	Chr1	23405264	A-G	Homo
SBS	Chr1	25173579	A-G	HET
SBS	Chr1	37312258	C-A	HET
SBS	Chr1	6422101	T-C	Homo
SBS	Chr1	8474087	A-G	HET
SBS	Chr10	21101407	C-T	Homo
SBS	Chr11	15364989	G-A	Homo
SBS	Chr11	18836817	A-G	HET
SBS	Chr12	12225040	C-T	HET
SBS	Chr2	11747171	T-A	Homo
SBS	Chr2	22682705	G-A	HET
SBS	Chr2	24924695	G-C	HET
SBS	Chr3	24374368	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g43610
SBS	Chr3	25468794	T-A	HET
SBS	Chr3	30879209	T-G	HET
SBS	Chr3	35757661	G-A	HET
SBS	Chr3	3740819	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g07360
SBS	Chr3	6506541	G-A	Homo
SBS	Chr3	973728	A-T	Homo
SBS	Chr3	973729	C-T	Homo
SBS	Chr4	10079951	C-A	HET
SBS	Chr4	12704001	C-A	HET
SBS	Chr4	13294847	G-A	HET
SBS	Chr4	16435889	T-A	Homo
SBS	Chr4	27839632	T-G	HET
SBS	Chr4	28384018	A-G	HET
SBS	Chr5	18584896	C-T	HET
SBS	Chr6	10775255	G-A	HET
SBS	Chr6	28962962	G-A	HET
SBS	Chr6	28962967	C-T	HET
SBS	Chr6	9122107	C-T	HET
SBS	Chr7	13140680	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g23310
SBS	Chr7	1543994	G-A	HET
SBS	Chr7	26500129	A-G	HET
SBS	Chr7	27672987	C-G	HET
SBS	Chr7	8075024	A-T	HET
SBS	Chr8	12664729	G-C	HET
SBS	Chr8	26366926	G-A	Homo
SBS	Chr8	940896	G-T	HET
SBS	Chr9	15837953	G-C	Homo

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	374411	374424	13	LOC_Os08g01640
Deletion	Chr3	3714253	3714254	1
Deletion	Chr3	4742597	4742602	5
Deletion	Chr5	12019469	12019470	1
Deletion	Chr8	14144239	14144241	2	LOC_Os08g23400
Deletion	Chr4	15908757	15908765	8
Deletion	Chr1	16312140	16312151	11
Deletion	Chr5	21642613	21642624	11
Deletion	Chr9	21658213	21658215	2	LOC_Os09g37580
Deletion	Chr8	23621782	23621786	4
Deletion	Chr1	32690811	32690812	1
Deletion	Chr4	33433597	33433605	8

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	1347425	1347430	6
Insertion	Chr1	27451277	27451279	3
Insertion	Chr11	17989032	17989034	3
Insertion	Chr11	9977048	9977048	1
Insertion	Chr2	30341645	30341694	50
Insertion	Chr2	8412118	8412119	2
Insertion	Chr4	2359340	2359341	2
Insertion	Chr4	7961462	7961462	1
Insertion	Chr4	8953676	8953701	26
Insertion	Chr5	17268170	17268171	2
Insertion	Chr6	1968189	1968190	2
Insertion	Chr7	13017447	13017447	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	2066345	2368871
Inversion	Chr1	2066363	2368878
Inversion	Chr2	2249683	2249864
Inversion	Chr4	7933011	7933196
Inversion	Chr9	20752711	21138749	LOC_Os09g36040
Inversion	Chr9	20752726	21138755	LOC_Os09g36040
Inversion	Chr9	21138954	21139385

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	8926733	Chr4	35190186	LOC_Os06g15740
Translocation	Chr6	8927009	Chr4	35190192	LOC_Os06g15740
Translocation	Chr11	12699276	Chr7	14859439	LOC_Os11g22130
Translocation	Chr11	12699374	Chr3	23240930	LOC_Os11g22130
Translocation	Chr12	17941543	Chr6	8926887	2
Translocation	Chr12	19376830	Chr1	13934750	2
Translocation	Chr9	21853392	Chr7	14380603	2
Translocation	Chr9	21853399	Chr7	14372271

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