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Mutant Information

Mutant Name	FN2180-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2180-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18922266	A-G	HET
SBS	Chr1	21096303	A-T	Homo
SBS	Chr1	29622959	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g51580
SBS	Chr1	32652242	A-G	HET
SBS	Chr1	40330894	T-A	Homo
SBS	Chr1	40330895	C-A	Homo
SBS	Chr1	454260	T-G	HET
SBS	Chr10	12116771	C-T	Homo
SBS	Chr11	20796975	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g35490
SBS	Chr11	24442940	T-C	HET
SBS	Chr12	15613360	A-G	Homo
SBS	Chr12	5569034	A-T	Homo
SBS	Chr2	2202726	T-A	Homo
SBS	Chr3	13335764	A-G	HET
SBS	Chr3	15896194	C-T	HET
SBS	Chr3	17511581	T-A	HET
SBS	Chr3	18279296	C-T	HET
SBS	Chr3	5034143	C-T	HET
SBS	Chr3	9892289	G-A	Homo
SBS	Chr4	20783912	A-G	Homo
SBS	Chr4	31507268	C-T	HET
SBS	Chr4	7867609	C-T	HET
SBS	Chr4	9568775	T-C	HET
SBS	Chr5	11042898	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g19030
SBS	Chr5	19474951	G-A	Homo
SBS	Chr6	10916855	G-A	HET
SBS	Chr6	16547640	C-T	HET
SBS	Chr7	5719195	G-A	HET
SBS	Chr7	5739402	A-G	HET
SBS	Chr7	6933079	G-T	HET
SBS	Chr7	7844806	C-T	HET
SBS	Chr8	17391607	C-T	HET
SBS	Chr8	18620097	G-A	HET
SBS	Chr9	12254472	T-G	HET
SBS	Chr9	15331091	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g25550
SBS	Chr9	9275925	A-T	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	878325	878329	4
Deletion	Chr9	1979386	1979393	7
Deletion	Chr1	2163625	2163632	7
Deletion	Chr5	2274830	2274831	1
Deletion	Chr4	2422084	2422086	2
Deletion	Chr5	8620001	8820000	199999	36
Deletion	Chr5	8823001	9121000	297999	53
Deletion	Chr5	9122001	9138000	15999	2
Deletion	Chr10	10832672	10832687	15
Deletion	Chr9	11971063	11971064	1
Deletion	Chr12	12536900	12536905	5
Deletion	Chr12	20827807	20827829	22
Deletion	Chr2	23796807	23796812	5
Deletion	Chr3	24139925	24139926	1
Deletion	Chr5	28143941	28143948	7
Deletion	Chr4	34296001	34444000	147999	24
Deletion	Chr1	36940723	36940727	4

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	8773360	8773361	2
Insertion	Chr5	10837772	10837773	2
Insertion	Chr6	26832649	26832649	1
Insertion	Chr6	27094509	27094510	2

No Inversion

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3298181	Chr8	17914973
Translocation	Chr9	4757291	Chr8	10071806
Translocation	Chr6	6140659	Chr1	12268773	2
Translocation	Chr6	6140669	Chr1	12309764
Translocation	Chr3	16812701	Chr1	18860178
Translocation	Chr10	22332741	Chr1	39121651

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