Search Results
Mutant Information |
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Mutant Name | FN2182-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2182-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 21
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
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SBS | Chr1 | 41625292 | A-T | HET | ||
SBS | Chr2 | 2318530 | A-T | HET | ||
SBS | Chr2 | 2318531 | C-T | HET | ||
SBS | Chr2 | 6644228 | G-T | HET | ||
SBS | Chr3 | 6591990 | C-G | HET | ||
SBS | Chr3 | 14858622 | C-T | HET | ||
SBS | Chr3 | 22522350 | C-A | HET | ||
SBS | Chr4 | 29244765 | A-T | HET | ||
SBS | Chr5 | 17470531 | T-A | HET | ||
SBS | Chr6 | 22500068 | C-A | HET | ||
SBS | Chr7 | 2934278 | A-T | Homo | ||
SBS | Chr7 | 12790824 | C-A | Homo | ||
SBS | Chr7 | 27232802 | C-G | HET | ||
SBS | Chr8 | 2765432 | C-T | HET | ||
SBS | Chr8 | 2765433 | C-T | HET | ||
SBS | Chr8 | 25400341 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g40130 |
SBS | Chr8 | 25816852 | C-T | HET | ||
SBS | Chr11 | 10921731 | G-A | HET | ||
SBS | Chr11 | 11933705 | C-A | Homo | ||
SBS | Chr12 | 16379135 | A-T | Homo | ||
SBS | Chr12 | 18263183 | T-A | HET |
Deletions: 16
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Deletion | Chr6 | 7115964 | 7115966 | 2 | |
Deletion | Chr10 | 9822550 | 9822555 | 5 | LOC_Os10g19280 |
Deletion | Chr9 | 10076736 | 10076749 | 13 | |
Deletion | Chr2 | 10795779 | 10795780 | 1 | |
Deletion | Chr10 | 14255423 | 14255424 | 1 | |
Deletion | Chr4 | 16635995 | 16636011 | 16 | |
Deletion | Chr7 | 17357048 | 17357051 | 3 | |
Deletion | Chr10 | 17504906 | 17504907 | 1 | |
Deletion | Chr11 | 18738158 | 18738175 | 17 | |
Deletion | Chr10 | 19722523 | 19722537 | 14 | |
Deletion | Chr4 | 20283001 | 20400000 | 116999 | 17 |
Deletion | Chr10 | 21782853 | 21782854 | 1 | |
Deletion | Chr1 | 22630061 | 22630062 | 1 | |
Deletion | Chr5 | 23921202 | 23921207 | 5 | |
Deletion | Chr7 | 24962841 | 24962842 | 1 | |
Deletion | Chr4 | 25321990 | 25321998 | 8 |
Insertions: 6
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 19636560 | 19987758 | |
Inversion | Chr4 | 19636585 | 19987782 | |
Inversion | Chr11 | 27483464 | 28138206 |
Translocations: 8
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 9417700 | Chr3 | 17629554 | |
Translocation | Chr5 | 12865051 | Chr2 | 10544221 | |
Translocation | Chr11 | 17989238 | Chr1 | 42446543 | 2 |
Translocation | Chr12 | 22721741 | Chr10 | 6570962 | |
Translocation | Chr11 | 23445917 | Chr5 | 24669625 | |
Translocation | Chr4 | 26107295 | Chr1 | 10836136 | |
Translocation | Chr3 | 34861978 | Chr1 | 41074990 | 2 |
Translocation | Chr3 | 34862554 | Chr1 | 41074970 | 2 |