Search Nipponbare

Mutant Information

Mutant Name	FN2182-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2182-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	41625292	A-T	HET
SBS	Chr11	10921731	G-A	HET
SBS	Chr11	11933705	C-A	Homo
SBS	Chr12	16379135	A-T	Homo
SBS	Chr12	18263183	T-A	HET
SBS	Chr2	2318530	A-T	HET
SBS	Chr2	2318531	C-T	HET
SBS	Chr2	6644228	G-T	HET
SBS	Chr3	14858622	C-T	HET
SBS	Chr3	22522350	C-A	HET
SBS	Chr3	6591990	C-G	HET
SBS	Chr4	29244765	A-T	HET
SBS	Chr5	17470531	T-A	HET
SBS	Chr6	22500068	C-A	HET
SBS	Chr7	12790824	C-A	Homo
SBS	Chr7	27232802	C-G	HET
SBS	Chr7	2934278	A-T	Homo
SBS	Chr8	25400341	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g40130
SBS	Chr8	25816852	C-T	HET
SBS	Chr8	2765432	C-T	HET
SBS	Chr8	2765433	C-T	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	7115964	7115966	2
Deletion	Chr10	9822550	9822555	5	LOC_Os10g19280
Deletion	Chr9	10076736	10076749	13
Deletion	Chr2	10795779	10795780	1
Deletion	Chr10	14255423	14255424	1
Deletion	Chr4	16635995	16636011	16
Deletion	Chr7	17357048	17357051	3
Deletion	Chr10	17504906	17504907	1
Deletion	Chr11	18738158	18738175	17
Deletion	Chr10	19722523	19722537	14
Deletion	Chr4	20283001	20400000	116999	17
Deletion	Chr10	21782853	21782854	1
Deletion	Chr1	22630061	22630062	1
Deletion	Chr5	23921202	23921207	5
Deletion	Chr7	24962841	24962842	1
Deletion	Chr4	25321990	25321998	8

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	11540047	11540047	1
Insertion	Chr4	2067626	2067626	1
Insertion	Chr6	11260052	11260052	1
Insertion	Chr7	17891197	17891198	2
Insertion	Chr9	18313692	18313700	9
Insertion	Chr9	21670580	21670581	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr4	19636560	19987758
Inversion	Chr4	19636585	19987782
Inversion	Chr11	27483464	28138206

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	9417700	Chr3	17629554
Translocation	Chr5	12865051	Chr2	10544221
Translocation	Chr11	17989238	Chr1	42446543	2
Translocation	Chr12	22721741	Chr10	6570962
Translocation	Chr11	23445917	Chr5	24669625
Translocation	Chr4	26107295	Chr1	10836136
Translocation	Chr3	34861978	Chr1	41074990	2
Translocation	Chr3	34862554	Chr1	41074970	2

Main menu