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Mutant Information

Mutant Name	FN2183-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2183-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Very Low (Below 24%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13198556	G-C	Homo
SBS	Chr1	15910192	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g28390
SBS	Chr1	16533318	A-C	HET
SBS	Chr1	25636344	G-A	HET
SBS	Chr1	43243633	C-G	HET
SBS	Chr1	8000123	C-G	HET
SBS	Chr1	9003112	A-C	HET
SBS	Chr10	17767966	T-C	Homo
SBS	Chr10	6822471	C-A	HET
SBS	Chr10	8705394	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17300
SBS	Chr11	1760742	G-A	HET
SBS	Chr11	24946161	C-T	Homo
SBS	Chr12	18196687	T-C	HET
SBS	Chr12	27207326	C-A	HET
SBS	Chr12	3726138	G-A	HET
SBS	Chr2	12296959	T-C	HET
SBS	Chr2	1288988	A-T	HET
SBS	Chr2	2425897	C-T	HET
SBS	Chr2	30277452	G-T	Homo
SBS	Chr2	31871352	G-A	Homo
SBS	Chr2	4790469	T-A	HET
SBS	Chr2	73021	T-C	Homo
SBS	Chr2	7658757	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g14030
SBS	Chr3	19481881	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g34210
SBS	Chr3	33970520	G-A	HET
SBS	Chr3	34026811	C-T	HET
SBS	Chr4	15479105	G-A	HET
SBS	Chr5	20451664	C-T	HET
SBS	Chr5	24896281	C-A	HET
SBS	Chr5	7498733	C-T	HET
SBS	Chr6	12032929	A-T	HET
SBS	Chr6	17809084	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g30700
SBS	Chr7	16727503	G-A	HET
SBS	Chr8	10701677	C-T	HET
SBS	Chr8	12701925	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g21280
SBS	Chr8	636722	C-T	HET
SBS	Chr9	15760867	G-A	HET

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	433213	433215	2
Deletion	Chr5	1090098	1090099	1
Deletion	Chr3	2483553	2483554	1
Deletion	Chr5	4259239	4259240	1
Deletion	Chr12	4522099	4522113	14
Deletion	Chr2	4792348	4792360	12	LOC_Os02g09310
Deletion	Chr4	5966765	5966773	8
Deletion	Chr9	6930851	6930854	3
Deletion	Chr3	6939778	6939788	10
Deletion	Chr12	9749684	9749692	8
Deletion	Chr4	10547092	10547110	18	LOC_Os04g18980
Deletion	Chr2	11679612	11679615	3
Deletion	Chr11	13042658	13042667	9
Deletion	Chr5	13075588	13075593	5
Deletion	Chr2	13599669	13599679	10
Deletion	Chr8	13873256	13873270	14	LOC_Os08g23050
Deletion	Chr8	14415673	14415676	3
Deletion	Chr2	15507345	15507350	5
Deletion	Chr10	17456314	17456318	4
Deletion	Chr10	17821577	17821586	9
Deletion	Chr3	18888532	18888538	6
Deletion	Chr3	20198288	20198299	11
Deletion	Chr6	21907267	21907279	12	LOC_Os06g37090
Deletion	Chr1	23695705	23695716	11
Deletion	Chr6	23705724	23705734	10	LOC_Os06g39880
Deletion	Chr1	23823683	23823691	8
Deletion	Chr1	25636322	25636333	11
Deletion	Chr4	29213597	29213600	3
Deletion	Chr1	30114090	30114091	1
Deletion	Chr3	30149266	30149271	5
Deletion	Chr3	32633078	32633085	7
Deletion	Chr2	34214506	34214513	7
Deletion	Chr2	34688089	34688099	10

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	20304055	20304060	6
Insertion	Chr12	26316418	26316419	2
Insertion	Chr3	98887	98888	2
Insertion	Chr4	3726413	3726413	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	7362307	Chr2	28410003
Translocation	Chr5	29808250	Chr4	2440064

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