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Mutant Information

Mutant Name	FN2184-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2184-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13038201	T-G	Homo
SBS	Chr1	16201123	T-A	Homo
SBS	Chr12	16663888	C-T	HET
SBS	Chr12	21287696	T-C	HET
SBS	Chr2	3876579	T-C	HET
SBS	Chr2	6841722	G-A	HET
SBS	Chr2	9575440	A-C	HET
SBS	Chr3	13400697	A-T	HET
SBS	Chr3	1530789	C-T	HET
SBS	Chr4	13420848	A-G	HET
SBS	Chr4	23668262	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g39710
SBS	Chr4	3399039	A-T	HET
SBS	Chr4	6062367	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g11150
SBS	Chr5	19433116	C-T	HET
SBS	Chr6	21190070	A-G	Homo
SBS	Chr6	25370356	G-A	HET
SBS	Chr6	8462937	G-A	HET
SBS	Chr7	15160148	C-G	Homo
SBS	Chr7	17931486	C-T	Homo
SBS	Chr7	9103025	G-T	Homo
SBS	Chr8	23202578	G-A	HET
SBS	Chr9	10015594	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g16380
SBS	Chr9	2792324	A-C	HET
SBS	Chr9	9944840	C-A	HET

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	2149900	2149901	1
Deletion	Chr9	2820208	2820209	1
Deletion	Chr7	9466109	9466116	7
Deletion	Chr7	12568364	12568365	1
Deletion	Chr4	15002607	15002608	1
Deletion	Chr5	21731612	21731614	2
Deletion	Chr5	23136929	23136946	17
Deletion	Chr6	25226001	25377000	150999	26
Deletion	Chr6	25382001	25449000	66999	9
Deletion	Chr3	33787006	33787186	180

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	4472888	4472889	2
Insertion	Chr11	2644717	2644718	2
Insertion	Chr2	3020951	3020952	2
Insertion	Chr5	24882841	24882865	25
Insertion	Chr8	6937929	6937929	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr7	15324313	15480754
Inversion	Chr7	15324319	15480756
Inversion	Chr6	24899902	25227589

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr11	13236365	Chr7	19139217
Translocation	Chr6	20576903	Chr4	9404447
Translocation	Chr11	22948988	Chr4	1144519
Translocation	Chr11	25810970	Chr7	12810134

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