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Mutant Information

Mutant Name	FN2185-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2185-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	5122281	C-T	HET
SBS	Chr2	10778506	A-G	HET
SBS	Chr2	14314249	A-T	HET
SBS	Chr2	21172795	T-G	HET
SBS	Chr2	22466400	C-A	HET
SBS	Chr3	7643284	T-A	Homo
SBS	Chr3	12746834	T-C	HET
SBS	Chr3	13867939	C-T	HET
SBS	Chr4	6750959	C-T	HET
SBS	Chr4	23695341	C-T	HET
SBS	Chr4	33320081	A-G	HET
SBS	Chr5	9348377	A-T	HET
SBS	Chr5	9965518	A-G	HET
SBS	Chr5	12383104	A-T	HET
SBS	Chr6	1040530	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g02830
SBS	Chr6	3568816	T-A	Homo
SBS	Chr6	10621342	A-T	HET
SBS	Chr6	12344492	C-T	HET
SBS	Chr6	16923403	C-T	Homo
SBS	Chr7	27295287	C-T	HET
SBS	Chr8	4772904	G-T	HET
SBS	Chr8	22684254	C-G	HET
SBS	Chr8	24999302	C-T	HET
SBS	Chr9	8206784	C-T	HET
SBS	Chr9	19635700	T-C	Homo
SBS	Chr9	21309478	C-T	HET
SBS	Chr10	14273203	C-T	HET
SBS	Chr11	21315664	C-T	HET
SBS	Chr12	3258440	A-G	HET
SBS	Chr12	5316613	C-A	HET
SBS	Chr12	9079756	G-C	HET
SBS	Chr12	10844427	G-A	HET
SBS	Chr12	23918963	C-T	HET
SBS	Chr12	25753920	T-A	HET

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	801041	801046	5
Deletion	Chr2	3320145	3320156	11
Deletion	Chr8	3922001	3948000	25999	5
Deletion	Chr4	5641548	5641551	3
Deletion	Chr3	7388822	7388831	9
Deletion	Chr3	7397066	7397069	3
Deletion	Chr1	7769332	7769334	2
Deletion	Chr1	7973411	7973414	3
Deletion	Chr8	11462800	11462807	7
Deletion	Chr6	14316947	14316950	3
Deletion	Chr6	15652976	15652980	4
Deletion	Chr2	15948700	15948704	4
Deletion	Chr5	16343795	16343802	7
Deletion	Chr1	17274911	17274920	9
Deletion	Chr3	21099920	21099925	5
Deletion	Chr7	21386368	21386375	7	LOC_Os07g35700
Deletion	Chr8	22446890	22446893	3
Deletion	Chr7	22802340	22802344	4
Deletion	Chr7	23809618	23809621	3	LOC_Os07g39730
Deletion	Chr12	24826866	24826872	6	LOC_Os12g40150
Deletion	Chr12	25194373	25194384	11	LOC_Os12g40700
Deletion	Chr4	31409347	31409353	6
Deletion	Chr3	33007183	33007186	3
Deletion	Chr1	34307634	34307638	4	LOC_Os01g59350

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	24346667	24346672	6
Insertion	Chr6	4166948	4166949	2
Insertion	Chr6	506094	506094	1
Insertion	Chr11	21680991	21681060	70

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	20598132	20666372	2
Inversion	Chr2	20598137	20666374	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2701186	Chr1	39381271	LOC_Os10g05470
Translocation	Chr12	16099385	Chr11	1513528	LOC_Os12g27370
Translocation	Chr12	16099402	Chr11	1513412	LOC_Os12g27370

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