Search Results
| Mutant Information |
|---|
| Mutant Name | FN2187-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2187-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10696927 | C-T | HET | ||
| SBS | Chr4 | 18609092 | A-C | HET | ||
| SBS | Chr4 | 25164768 | A-T | HET | ||
| SBS | Chr4 | 30676453 | C-T | HET | ||
| SBS | Chr5 | 4794471 | C-T | Homo | ||
| SBS | Chr6 | 11486254 | A-G | Homo | ||
| SBS | Chr6 | 24180715 | C-T | Homo | ||
| SBS | Chr6 | 25638949 | C-T | HET | ||
| SBS | Chr7 | 22710315 | G-A | Homo | ||
| SBS | Chr7 | 28169912 | G-A | Homo | ||
| SBS | Chr8 | 24895829 | G-A | HET | ||
| SBS | Chr8 | 27754843 | A-G | HET | ||
| SBS | Chr9 | 1390817 | C-G | HET | ||
| SBS | Chr9 | 21456678 | T-G | HET | ||
| SBS | Chr9 | 22594118 | G-A | HET | ||
| SBS | Chr10 | 1895170 | G-A | Homo | ||
| SBS | Chr10 | 7806489 | A-G | Homo | ||
| SBS | Chr10 | 12883792 | A-T | Homo | ||
| SBS | Chr10 | 20743550 | G-A | Homo | ||
| SBS | Chr11 | 12015318 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g20760 |
| SBS | Chr11 | 16466071 | C-A | Homo |
Deletions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 1010033 | 1010034 | 1 | |
| Deletion | Chr10 | 12537971 | 12537974 | 3 | |
| Deletion | Chr12 | 13482994 | 13483002 | 8 | |
| Deletion | Chr5 | 25063082 | 25063085 | 3 | |
| Deletion | Chr4 | 30554765 | 30554766 | 1 | |
| Deletion | Chr4 | 32202610 | 32202611 | 1 | LOC_Os04g54020 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 27595635 | 27595636 | 2 | |
| Insertion | Chr8 | 11049434 | 11049434 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 13378872 | 13509754 | LOC_Os04g23390 |
| Inversion | Chr4 | 13378876 | 13509964 | LOC_Os04g23390 |
| Inversion | Chr11 | 21794823 | 21841147 | 2 |
| Inversion | Chr11 | 21794824 | 21841152 | 2 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 1241762 | Chr1 | 39841277 | |
| Translocation | Chr7 | 9977855 | Chr2 | 19708342 | LOC_Os07g16960 |
| Translocation | Chr11 | 13555194 | Chr4 | 13509964 | LOC_Os11g23920 |
| Translocation | Chr11 | 13555197 | Chr4 | 13509755 | LOC_Os11g23920 |
| Translocation | Chr9 | 18185185 | Chr1 | 10304558 | LOC_Os09g29910 |
| Translocation | Chr11 | 27828090 | Chr7 | 17812786 |