Search Results

Mutant Information

Mutant Name	FN2188-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2188-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1087506	G-T	HET
SBS	Chr1	7373350	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g13229
SBS	Chr1	15681112	T-A	HET
SBS	Chr1	17470301	A-T	HET
SBS	Chr1	20849368	C-T	HET
SBS	Chr1	29352392	C-T	HET
SBS	Chr2	20554414	A-G	HET
SBS	Chr3	12595276	A-C	HET
SBS	Chr3	13816384	C-T	HET
SBS	Chr3	14144452	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g24820
SBS	Chr3	22050505	A-G	Homo
SBS	Chr3	26345895	C-T	Homo
SBS	Chr3	29431536	T-C	HET
SBS	Chr3	31518214	T-C	HET
SBS	Chr4	7689981	T-C	HET
SBS	Chr4	20407604	C-T	HET
SBS	Chr5	13542333	G-T	HET
SBS	Chr5	20485217	C-A	Homo
SBS	Chr5	26808545	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g46220
SBS	Chr5	27032766	C-A	HET
SBS	Chr5	29702855	C-T	HET
SBS	Chr6	877708	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g02540
SBS	Chr6	24350047	A-T	HET
SBS	Chr6	29734202	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g49060
SBS	Chr6	31146721	C-T	HET
SBS	Chr8	327826	C-A	HET
SBS	Chr8	22060050	T-A	HET
SBS	Chr9	8577587	A-T	HET
SBS	Chr10	7340691	A-G	Homo
SBS	Chr10	7602067	C-T	Homo
SBS	Chr10	19161943	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g35840
SBS	Chr11	10093240	G-C	HET
SBS	Chr11	12002639	G-A	HET
SBS	Chr12	14353302	A-G	Homo
SBS	Chr12	22514065	C-T	HET
SBS	Chr12	24869881	C-T	Homo
SBS	Chr12	26218201	T-C	Homo

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1158027	1158034	7	LOC_Os12g03070
Deletion	Chr5	6837404	6837409	5
Deletion	Chr5	7357294	7357296	2	LOC_Os05g12808
Deletion	Chr12	9822001	9852000	29999	6
Deletion	Chr1	15030001	15042000	11999	2
Deletion	Chr4	16544745	16544758	13
Deletion	Chr1	19729804	19729815	11
Deletion	Chr3	22990340	22990341	1
Deletion	Chr3	25002824	25002830	6	LOC_Os03g44430
Deletion	Chr12	27219057	27219063	6
Deletion	Chr5	29624970	29624972	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	20936897	20936898	2
Insertion	Chr1	29945040	29945041	2
Insertion	Chr7	22195464	22195465	2
Insertion	Chr9	17975514	17975514	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	19664584	19664695	LOC_Os09g32952
Inversion	Chr11	22239509	22443969	2
Inversion	Chr11	22239626	22443974	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6943700	Chr8	5173801	2
Translocation	Chr11	22239516	Chr3	21135240
Translocation	Chr11	22239612	Chr3	21135179
Translocation	Chr4	27007925	Chr2	28383916
Translocation	Chr12	27050407	Chr6	6604590	2
Translocation	Chr4	34971372	Chr2	22516704

Main menu