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Mutant Information

Mutant Name	FN2190-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2190-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16972113	G-A	HET
SBS	Chr1	26106907	C-T	Homo
SBS	Chr1	42295572	C-T	HET
SBS	Chr1	9163063	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g16180
SBS	Chr10	1504648	G-A	HET
SBS	Chr10	16353934	G-A	HET
SBS	Chr10	18655384	T-G	HET
SBS	Chr10	3251317	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g06310
SBS	Chr11	14176553	G-A	HET
SBS	Chr11	23751653	C-A	HET
SBS	Chr12	3995526	A-G	Homo
SBS	Chr2	18889362	G-C	HET
SBS	Chr2	7923789	A-G	HET
SBS	Chr3	13313786	G-A	Homo
SBS	Chr3	2531692	A-T	HET
SBS	Chr3	26376320	C-T	HET
SBS	Chr3	33149255	T-A	HET
SBS	Chr4	100615	A-G	Homo
SBS	Chr4	27838159	C-T	HET
SBS	Chr4	33019240	C-T	HET
SBS	Chr5	28379862	T-A	HET
SBS	Chr5	8669144	C-T	HET
SBS	Chr6	1107683	G-A	HET
SBS	Chr6	17544636	A-T	HET
SBS	Chr6	17991583	C-A	HET
SBS	Chr6	21879217	T-A	HET
SBS	Chr6	9758854	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g16850
SBS	Chr7	10768624	T-A	HET
SBS	Chr7	5131252	G-T	HET
SBS	Chr8	6685630	T-C	Homo
SBS	Chr9	16565471	G-C	HET
SBS	Chr9	19873914	T-G	HET
SBS	Chr9	5757000	T-C	HET
SBS	Chr9	8661687	T-C	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3521114	3521115	1
Deletion	Chr8	4270499	4270525	26
Deletion	Chr10	9158230	9158232	2
Deletion	Chr7	11472788	11472789	1
Deletion	Chr9	13184372	13184404	32
Deletion	Chr6	15837524	15837532	8
Deletion	Chr7	18118708	18118716	8
Deletion	Chr9	18988252	18988257	5	LOC_Os09g31486
Deletion	Chr9	19214400	19214410	10
Deletion	Chr10	20935023	20935028	5
Deletion	Chr3	22121952	22121971	19
Deletion	Chr2	24703237	24703240	3
Deletion	Chr4	26518176	26518178	2
Deletion	Chr2	27394275	27394276	1
Deletion	Chr7	28721452	28721457	5
Deletion	Chr7	29099107	29099110	3	LOC_Os07g48602
Deletion	Chr2	30868472	30868473	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	7581076	7581076	1	LOC_Os11g13790
Insertion	Chr12	21982395	21982395	1
Insertion	Chr2	3945717	3945718	2
Insertion	Chr6	18659202	18659202	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	7131420	7131693	LOC_Os02g13360
Inversion	Chr3	15713163	16198822

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	5655158	Chr2	32711057	2
Translocation	Chr9	19804248	Chr3	15713164
Translocation	Chr12	22666371	Chr2	17246351	2
Translocation	Chr2	26568590	Chr1	4970615
Translocation	Chr3	29194440	Chr1	31269094

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