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Mutant Information

Mutant Name	FN2191-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2191-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22774857	T-C	Homo
SBS	Chr1	28310334	G-T	HET
SBS	Chr1	38100905	T-C	HET
SBS	Chr1	38730251	T-C	HET
SBS	Chr1	39380044	C-T	HET
SBS	Chr1	6641879	A-G	HET
SBS	Chr1	8730592	A-T	HET
SBS	Chr10	11326779	G-C	HET
SBS	Chr10	13572712	C-T	HET
SBS	Chr10	8901157	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17610
SBS	Chr11	21779356	A-T	Homo
SBS	Chr11	21779357	A-T	Homo
SBS	Chr11	21779358	A-T	Homo
SBS	Chr11	23532492	C-G	HET
SBS	Chr11	9521397	G-C	Homo
SBS	Chr12	6536098	G-T	HET
SBS	Chr2	11837043	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g20100
SBS	Chr2	17296219	A-G	HET
SBS	Chr2	3822100	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g07400
SBS	Chr3	11756185	G-A	Homo
SBS	Chr3	25516387	A-G	HET
SBS	Chr3	35144541	T-C	HET
SBS	Chr3	5302499	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g10410
SBS	Chr4	12565977	C-T	HET
SBS	Chr4	16772008	G-A	HET
SBS	Chr4	17701642	G-T	HET
SBS	Chr4	18497568	C-T	HET
SBS	Chr4	18793511	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g31420
SBS	Chr5	22318718	C-T	Homo
SBS	Chr5	29751673	G-A	HET
SBS	Chr6	12335538	T-C	HET
SBS	Chr6	14982660	C-T	HET	STOP_GAINED	LOC_Os06g25620
SBS	Chr6	22226898	A-G	HET
SBS	Chr6	25573534	C-T	HET
SBS	Chr6	25744001	A-T	HET
SBS	Chr7	17966795	C-T	Homo
SBS	Chr7	22684518	G-A	Homo
SBS	Chr7	24272386	A-C	HET	STOP_GAINED	LOC_Os07g40510
SBS	Chr7	28370149	C-A	HET
SBS	Chr8	11009887	C-T	HET
SBS	Chr8	15001720	G-T	Homo
SBS	Chr8	15214874	C-T	Homo
SBS	Chr8	21661365	T-A	HET
SBS	Chr8	21661366	G-A	HET
SBS	Chr9	10084322	G-C	HET
SBS	Chr9	3359389	G-A	HET

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	6510001	6537000	26999	3
Deletion	Chr10	6539001	6583000	43999	6
Deletion	Chr10	6837001	7037000	199999	24
Deletion	Chr10	7092001	7158000	65999	10
Deletion	Chr10	7211001	7228000	16999	4
Deletion	Chr10	7237001	7365000	127999	20
Deletion	Chr10	7370001	7620000	249999	35
Deletion	Chr10	7622001	7719000	96999	19
Deletion	Chr11	11672078	11672096	18
Deletion	Chr8	15914891	15914892	1
Deletion	Chr8	16241757	16241770	13
Deletion	Chr2	19247096	19247107	11
Deletion	Chr2	20384518	20384524	6
Deletion	Chr8	21057699	21057705	6
Deletion	Chr5	27044699	27044702	3	LOC_Os05g46720
Deletion	Chr1	27428083	27428084	1
Deletion	Chr1	39529001	39550000	20999	3
Deletion	Chr1	41170923	41170924	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	19077681	19077684	4
Insertion	Chr10	12235631	12235631	1
Insertion	Chr2	20911076	20911079	4
Insertion	Chr3	23143532	23143532	1	LOC_Os03g41624

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	13377772	13406256	2

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	748146	Chr11	717861
Translocation	Chr3	4463815	Chr2	2674131	2
Translocation	Chr12	6248354	Chr8	4190745
Translocation	Chr2	7158888	Chr1	35235637
Translocation	Chr6	10800796	Chr4	16769165
Translocation	Chr10	13685211	Chr6	9639506	2
Translocation	Chr8	17916355	Chr7	22983866	2
Translocation	Chr11	22304260	Chr7	5845046
Translocation	Chr11	24656029	Chr8	8656763	2
Translocation	Chr11	25262634	Chr7	5845118

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