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Mutant Information

Mutant Name	FN2195-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2195-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6050475	G-A	Homo
SBS	Chr1	33194842	G-A	Homo
SBS	Chr2	7319606	T-A	HET
SBS	Chr2	17755389	G-A	HET
SBS	Chr3	8887761	A-G	HET	STOP_LOST	LOC_Os03g16110
SBS	Chr3	16723101	C-T	HET
SBS	Chr3	18833943	C-T	HET
SBS	Chr3	23198284	C-T	HET
SBS	Chr3	27456627	G-T	HET
SBS	Chr4	2933113	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05730
SBS	Chr4	7735679	G-T	Homo
SBS	Chr4	11351246	T-A	Homo
SBS	Chr4	11397985	G-A	Homo
SBS	Chr4	17130192	G-C	Homo
SBS	Chr4	26417088	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g44640
SBS	Chr5	5154448	C-A	Homo
SBS	Chr5	9561466	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g16790
SBS	Chr5	12292745	C-T	HET
SBS	Chr5	26922832	C-G	HET
SBS	Chr6	2270737	T-C	HET
SBS	Chr6	12010283	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g20810
SBS	Chr6	12887652	G-A	Homo
SBS	Chr6	19350919	C-A	Homo
SBS	Chr6	23655495	T-C	HET
SBS	Chr6	26837916	C-T	HET
SBS	Chr6	31022072	C-T	HET
SBS	Chr7	9851759	C-G	HET
SBS	Chr7	17515748	T-C	HET
SBS	Chr7	17824231	T-A	HET
SBS	Chr7	19214769	G-A	HET
SBS	Chr7	19485741	T-A	HET
SBS	Chr7	21435553	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g35790
SBS	Chr7	28138605	C-G	HET
SBS	Chr8	13232481	T-A	HET
SBS	Chr8	19909146	T-C	Homo
SBS	Chr8	26428024	A-G	HET
SBS	Chr9	1279786	A-G	HET
SBS	Chr10	4449157	A-G	Homo
SBS	Chr10	9086118	G-T	HET
SBS	Chr11	3539300	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g07100
SBS	Chr11	15147368	A-G	HET
SBS	Chr11	19360226	A-G	Homo
SBS	Chr11	22180743	T-C	Homo
SBS	Chr11	23256647	G-A	Homo
SBS	Chr12	5307178	C-T	HET
SBS	Chr12	20347859	A-G	HET

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1124647	1124856	209
Deletion	Chr4	4352001	4385000	32999	4
Deletion	Chr5	4503105	4503108	3
Deletion	Chr5	9390192	9390198	6
Deletion	Chr1	16893906	16893907	1
Deletion	Chr3	19356751	19356752	1
Deletion	Chr11	22108205	22108207	2
Deletion	Chr1	23154762	23154770	8	LOC_Os01g40930
Deletion	Chr4	27310906	27310907	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	2824391	2824391	1	LOC_Os08g05360
Insertion	Chr8	12481418	12481418	1
Insertion	Chr9	14315063	14315066	4
Insertion	Chr11	16714835	16714836	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	13841213	14788105	LOC_Os02g23890
Inversion	Chr2	13841216	14788115	LOC_Os02g23890
Inversion	Chr1	22391641	23157709	LOC_Os01g39700
Inversion	Chr1	22542374	23141665	2

Translocations: 14

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	4352892	Chr1	22542378
Translocation	Chr5	4775451	Chr4	13019567	LOC_Os05g08710
Translocation	Chr5	4776151	Chr4	13017574	2
Translocation	Chr10	5720401	Chr2	24465250	2
Translocation	Chr6	7740270	Chr1	22432122	LOC_Os06g13890
Translocation	Chr6	7740274	Chr1	22391653	2
Translocation	Chr2	13463464	Chr1	22432142
Translocation	Chr8	16458612	Chr2	10833927
Translocation	Chr9	16540012	Chr3	12661074
Translocation	Chr12	18687121	Chr9	6055960
Translocation	Chr3	19699866	Chr1	20308405	2
Translocation	Chr11	21598988	Chr5	4775468	2
Translocation	Chr8	21861945	Chr6	10139916
Translocation	Chr12	23236505	Chr8	4010297	LOC_Os12g37830

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