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Mutant Information

Mutant Name	FN2197-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2197-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	38387671	A-T	HET
SBS	Chr10	20038810	G-C	HET
SBS	Chr10	267236	C-T	HET
SBS	Chr10	2772990	T-C	HET
SBS	Chr11	11434487	C-T	HET
SBS	Chr11	17837150	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g30640
SBS	Chr11	21168940	C-T	Homo
SBS	Chr11	23816458	G-A	Homo
SBS	Chr12	12420907	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g22080
SBS	Chr12	18201695	G-C	HET
SBS	Chr2	11158197	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g19140
SBS	Chr2	2317801	G-A	Homo
SBS	Chr2	23508454	C-T	Homo
SBS	Chr2	23785751	G-C	Homo
SBS	Chr2	2612464	T-C	Homo
SBS	Chr2	26425164	A-G	Homo
SBS	Chr2	32974324	G-A	HET
SBS	Chr3	20722237	C-T	HET
SBS	Chr3	30866325	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g53810
SBS	Chr4	11688158	G-A	Homo
SBS	Chr4	18538213	A-C	Homo
SBS	Chr4	1867474	A-T	HET
SBS	Chr4	4728012	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g08710
SBS	Chr5	14000827	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g24200
SBS	Chr5	24204859	A-G	Homo
SBS	Chr5	26094364	A-C	HET
SBS	Chr6	25211170	C-T	HET
SBS	Chr6	7286966	G-A	HET
SBS	Chr7	22240330	G-T	HET
SBS	Chr8	16245376	C-T	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1174001	1217000	42999	4
Deletion	Chr4	2633674	2633675	1
Deletion	Chr4	3115001	3158000	42999	6
Deletion	Chr4	3161001	3219000	57999	11
Deletion	Chr12	12046496	12046497	1
Deletion	Chr5	12061543	12061544	1
Deletion	Chr10	14213580	14213581	1
Deletion	Chr1	15306803	15306804	1
Deletion	Chr3	16643681	16643704	23
Deletion	Chr8	18297001	18311000	13999	3
Deletion	Chr1	22329000	22329001	1
Deletion	Chr8	26489258	26489259	1
Deletion	Chr1	34049175	34049176	1

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	31773232	31773233	2
Insertion	Chr1	9033670	9033670	1	LOC_Os01g16050
Insertion	Chr10	10757103	10757153	51
Insertion	Chr10	164450	164450	1
Insertion	Chr11	26449357	26449357	1
Insertion	Chr2	9396604	9396604	1
Insertion	Chr4	8749036	8749036	1
Insertion	Chr4	9549950	9549950	1
Insertion	Chr5	12473144	12473144	1
Insertion	Chr7	6431611	6431616	6	LOC_Os07g11640
Insertion	Chr8	2663239	2663240	2
Insertion	Chr8	3980778	3980778	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	3119280	3939556	2
Inversion	Chr5	16876085	16886724	2
Inversion	Chr5	16877203	16886725	2
Inversion	Chr11	17009889	17054123	2
Inversion	Chr11	17009897	17054132	2

Translocations: 15

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4845481	Chr1	35222208
Translocation	Chr9	7359256	Chr1	18682199
Translocation	Chr9	8289890	Chr6	11646602
Translocation	Chr12	8540937	Chr1	39127625	LOC_Os12g14930
Translocation	Chr10	8760208	Chr3	19409934	2
Translocation	Chr5	11421900	Chr1	15460374	LOC_Os05g19610
Translocation	Chr10	12860090	Chr2	16818187	LOC_Os10g24980
Translocation	Chr12	13936898	Chr4	16502356	LOC_Os12g24420
Translocation	Chr12	17802716	Chr7	11613953	LOC_Os12g29780
Translocation	Chr4	19009379	Chr2	17022674	2
Translocation	Chr11	23409493	Chr5	29582833	LOC_Os11g39320
Translocation	Chr11	23409500	Chr5	29582335	LOC_Os11g39320
Translocation	Chr4	26079680	Chr3	22522068	2
Translocation	Chr8	27374378	Chr6	2829531	2
Translocation	Chr11	27701516	Chr4	33337464	LOC_Os11g45780

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