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Mutant Information

Mutant Name	FN2198-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2198-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7389014	G-A	Homo
SBS	Chr1	30744599	G-A	HET
SBS	Chr1	31476099	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g54700
SBS	Chr1	31513464	A-G	HET
SBS	Chr2	14202644	G-A	HET
SBS	Chr3	6499594	G-A	HET
SBS	Chr4	3548792	C-T	Homo
SBS	Chr4	3548793	C-A	Homo
SBS	Chr4	6148617	C-T	HET
SBS	Chr5	14550440	G-A	Homo
SBS	Chr5	15604068	A-G	Homo
SBS	Chr5	16721754	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g28540
SBS	Chr5	25305598	A-T	HET
SBS	Chr6	5113827	T-A	HET
SBS	Chr6	23001155	T-C	HET
SBS	Chr6	28330043	G-A	HET
SBS	Chr7	18084179	A-G	Homo
SBS	Chr7	28577275	C-T	Homo
SBS	Chr8	11510811	C-T	HET
SBS	Chr9	4237917	C-T	HET
SBS	Chr9	9365655	T-C	HET
SBS	Chr10	898059	G-T	HET
SBS	Chr10	1110358	T-A	HET
SBS	Chr10	17312247	T-A	Homo
SBS	Chr10	17312248	C-A	Homo
SBS	Chr10	20679397	T-A	HET
SBS	Chr11	2942796	A-G	HET
SBS	Chr11	8407239	A-G	Homo
SBS	Chr11	14201631	C-G	HET
SBS	Chr11	24005114	G-A	HET
SBS	Chr12	19211009	C-T	HET
SBS	Chr12	19211013	G-T	HET

Deletions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	10986253	10986255	2
Deletion	Chr7	11816206	11816208	2
Deletion	Chr9	22493234	22493313	79
Deletion	Chr4	23335845	23335848	3
Deletion	Chr4	24011455	24011457	2
Deletion	Chr3	24169219	24169230	11	LOC_Os03g43350
Deletion	Chr4	27078451	27078458	7	LOC_Os04g45750

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	19526477	19526477	1
Insertion	Chr1	38126198	38126198	1
Insertion	Chr2	1897728	1897728	1
Insertion	Chr2	28185138	28185138	1
Insertion	Chr4	18043642	18043642	1
Insertion	Chr5	21998763	21998763	1
Insertion	Chr6	22465517	22465517	1
Insertion	Chr7	7882486	7882486	1
Insertion	Chr9	514361	514361	1
Insertion	Chr10	8280328	8280328	1
Insertion	Chr10	14007456	14007456	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	7153214	7502899	2
Inversion	Chr12	24959400	25231541	LOC_Os12g40300

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	6370712	Chr4	16080205
Translocation	Chr5	6652331	Chr4	1448385	2
Translocation	Chr12	17453147	Chr3	25932020
Translocation	Chr8	18745849	Chr3	18929781
Translocation	Chr12	25231546	Chr8	7049252
Translocation	Chr7	28618363	Chr6	20154743

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